| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3052 |
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| Symbol | |
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| ID | 4019578 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 3665747 |
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| End bp | 3667294 |
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| Gene Length | 1548 bp |
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| Protein Length | 515 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637957104 |
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| Product | carotenoid oxygenase |
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| Protein accession | YP_564053 |
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| Protein GI | 91794402 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3670] Lignostilbene-alpha,beta-dioxygenase and related enzymes |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACAGAA GACAGTTTGT TACATCATCA CTAGCCTTAT TAACGACAGC CGCTTGGGGC
GGCGCTGCCG CTAAGCTACT GTCGCTGAAT AAGGTGTCTG AGCTTAAGCG TCAGCCGTGG
GCGATAGGTT TTTTGGGGGC AGAGCCAAGT CCGCTTAAAA AAATGACAGT CACAGGGACC
TTTCCATTAG CGCTTGAAGG CTGCTTATAT CGTAATGGTC CGGCTAAGAT GTCACGAGCT
GGGTTGGATT ATCAACATTG GTTTGATGGC GATGGCATGG TGCAAAAATT TACCATTAAA
GCCGGCGAGG TAAGCCATCA GAGTGAGTTT ATCAAGACAG AGAAATACCT CGCCGAGGAG
CAGGCTGGAA AATTCCTGTT CAATAGTGCC GGCACAGTGA TCCCCAATAG CCGAGCGATT
GGCAACAATG ATGATATCAA TACCGCCAAT ACCAGTTTAC TCCCTAGGAA TGGTCAATTG
CTTGCTTTGT GGGAGGCGGG TTCTCCCCAT ATGATAGACC CAGACAATTT ATCGACCCAA
GGCATTAAGA GTTTTGGTGC TAAGTTCACA GGACTACCTT TTTCTGCTCA TCCCTTAGCA
GATGGTGACG GTGGATTGTG GAATTTCGGT TGCTGGTACG TAGGTGGCAA CAAGACGCTC
TTGGTCTATC AGGTGGGCAG TGATGATAAT GTATCTCGCT TAGCCAGTAT TGAATTACCG
CAAGCTGGCT ATATTCACGA TTTTGCTCAA AGCCAAAACA AATTGGTGTT CTATATTCCC
CCTTGTGTAT ATCAGCACTG TGATACTTAT ATCGACTCAT TTACATGGCA ACAAGGGCTT
GGGTCTAAGT TACTTATTAT AGATAAGCAT GACTTTGAGA AGCGCCAGTA CGTGGACTTG
CCCGATGGTT TTGTCTTTCA TTTTGGCCAA GCATTCGAAG AAGAGAACCA GATGTGGGTG
GAGTTAAGTC TCTATAACAA CGCCGATATC TTAACCCAAG GGATGAAGTC CCTGTTAAAA
GGTGATCAAG CCGAGATAAC TCCTGAGGCA CAGTGGGTGC GAATTAGCAT TGAGCTTGAA
AGCACTACAG CATCTAACTC CGAGTTGCTA AGACTGAATG GGAAAGCTTT GTCAGCTCAA
AAAACTAATG AAGCGCAAAT AAGCTATTCA GGGGTCATGA TGGAGTTTCC TCAATTTGAT
CAAAGTGGTC ATGGCATGAG ACTGGGTAAG GCAACCTATG GCATTGGCGC TTCAGCGTTG
AGTCTCTCTG GATTAAGCGA CACCTTGTAC CGTGTGGCAA GTCAGCCAGA GCAAGCTGTG
CAATCCTACC ATTTAGGCGC CAATATTATT GCCGAAGAAG CCTTGTTTAT TGAAAGTCAT
GATGACACGG AAGGTTACTT AGTGATGACC TGGCTTGATT ATGGCAGACA AGTATCAGGG
CTCAGCGTGT TTGATGCGAG CAAGATCACA CAAGGGCCAA TAGCAACGGC CAAGTTAGAT
GCCGTCATTC CCTTAGGATT TCATGGCTGT TTTATAAAAA GTGAATAA
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| Protein sequence | MDRRQFVTSS LALLTTAAWG GAAAKLLSLN KVSELKRQPW AIGFLGAEPS PLKKMTVTGT
FPLALEGCLY RNGPAKMSRA GLDYQHWFDG DGMVQKFTIK AGEVSHQSEF IKTEKYLAEE
QAGKFLFNSA GTVIPNSRAI GNNDDINTAN TSLLPRNGQL LALWEAGSPH MIDPDNLSTQ
GIKSFGAKFT GLPFSAHPLA DGDGGLWNFG CWYVGGNKTL LVYQVGSDDN VSRLASIELP
QAGYIHDFAQ SQNKLVFYIP PCVYQHCDTY IDSFTWQQGL GSKLLIIDKH DFEKRQYVDL
PDGFVFHFGQ AFEEENQMWV ELSLYNNADI LTQGMKSLLK GDQAEITPEA QWVRISIELE
STTASNSELL RLNGKALSAQ KTNEAQISYS GVMMEFPQFD QSGHGMRLGK ATYGIGASAL
SLSGLSDTLY RVASQPEQAV QSYHLGANII AEEALFIESH DDTEGYLVMT WLDYGRQVSG
LSVFDASKIT QGPIATAKLD AVIPLGFHGC FIKSE
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