| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2974 |
|---|
| Symbol | |
|---|
| ID | 4019499 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 3559981 |
|---|
| End bp | 3560715 |
|---|
| Gene Length | 735 bp |
|---|
| Protein Length | 244 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637957025 |
|---|
| Product | 16S ribosomal RNA methyltransferase RsmE |
|---|
| Protein accession | YP_563975 |
|---|
| Protein GI | 91794324 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1385] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR00046] RNA methyltransferase, RsmE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.269351 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAGTCC CACGCATTTA CCAATCCATC GCCCAGCTTG AGATCGGCCA AGCCTATTCT
CTCGATGAAG ACGGCGCAGC TCATATCGGT AGAGTCCTTC GAATGAGTGA AGGCGAGCAA
GTGATGCTTT TCAACGGCGA TGGCAAAGAT TACTTAGCCG ATATCACCAG TGCCAGCAAA
AAAAATATCA CGATCACCAT CATTAGCATG GAAGATAATC GCAGTGAATC GGGTCTGAAT
TTACACTTAG GCCAAGTTAT CTCCCGTGGT GACAGGATGG AGTTCACCAT TCAAAAGTCG
GTGGAATTAG GGGTGAATAC CATTACCCCT TTATTCTCAG AACGTTGCGG TGTAAAACTA
ACCGGCGAGC GATTAGAAAA GAAAATCAAT CAATGGCAAA AAATCGTCAT CAGCGCCTGT
GAACAATCCG GTCGCAGCCA AGTGCCCCTC ATTCGTCCGG CCATGGATGT TGCCGCTTGG
TGCCAAGAGC CTAGCCAAGC CTTAAAGCTT AATTTACACC CAAGAGCCAG CCATGGCATT
AAGGGGTTAA CGCTCGAAAA TCCAAGAGTT CGATTACTCA TAGGCCCTGA GGGTGGCTTG
TCTAGTGAAG AAATTCTCAT GACAGAGCAG TGTGACTTTA CCGATGTCTT GCTTGGCCCT
AGAGTGTTAA GGACTGAAAC GGCTTCATTA ACCGCTATAA CAGCGTTGCA GTTAACTTTT
GGCGATCTCG GCTAA
|
|---|
| Protein sequence | MRVPRIYQSI AQLEIGQAYS LDEDGAAHIG RVLRMSEGEQ VMLFNGDGKD YLADITSASK
KNITITIISM EDNRSESGLN LHLGQVISRG DRMEFTIQKS VELGVNTITP LFSERCGVKL
TGERLEKKIN QWQKIVISAC EQSGRSQVPL IRPAMDVAAW CQEPSQALKL NLHPRASHGI
KGLTLENPRV RLLIGPEGGL SSEEILMTEQ CDFTDVLLGP RVLRTETASL TAITALQLTF
GDLG
|
|---|
| |