| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2933 |
|---|
| Symbol | |
|---|
| ID | 4019458 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 3501927 |
|---|
| End bp | 3503411 |
|---|
| Gene Length | 1485 bp |
|---|
| Protein Length | 494 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637956984 |
|---|
| Product | 4Fe-4S ferredoxin, iron-sulfur binding |
|---|
| Protein accession | YP_563934 |
|---|
| Protein GI | 91794283 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0348] Polyferredoxin |
|---|
| TIGRFAM ID | [TIGR02745] cytochrome c oxidase accessory protein FixG |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTCAGC AAGAGCAAGC CTTCCCCAAT ACCGAACAAA AAACCTATGG CGCATCGGCA
GGGCAAATAC CTATAGTCAA CCTCCCCACA GGCAATGGCC CTAGTGTGAG GTCTGTGAAT
CTGCACACTC CAACGACAAA AGGGGGTACT GCCGAGGGAA AAATCCAATT TCGCGAACAA
AAAGGCCCGT TTCAGCAGTT AAGAAGCCTG CTCAACAGCA TGCTGGTGTT GATCTTTTTT
ATTATCCCAT TTATCAATTA CCAAGGCCGA CAAGCCATAC TATTTGATGT TAATGAGCAA
CAATTTCATT TTTTCTCACT CACATTATGG CCGCAGGATT TTACCTTATT GGCTTGGGTA
TTTATCGCCG CCGCCTTTGG ACTGTTTTTT ATTACCGTGT TTTGGGGCCG TGTCTGGTGC
GGTTTTCTAT GCCCGCAAAC CGCCTGGACC TTTATGTATG TGTGGATTGA AACCCGCATA
GAAGGCAGCA GTAATAAGCG TAAACTCTTA GATAAGGCCG CCTGGACAAG CAGCAAGCTC
ATCAAAAGGA GCAGCAAACA CAGCCTATGG GCCCTAACAG CCCTACTGAC TGGCTGCGGC
TTTATTGGTT ACTTTGTGCC AGCGAGGGAA TTATATCTGG ATATTTTTAC TCTTTCTGGC
AGCTTCTGGG TCAGCAGTTG GGTGTGGTTT TTCGCTATCT GTACCTATTT AAATGCCGGT
TGGATGCGGG AACAAATGTG CCTACATTGC TGCCCCTATT CACGCTTTCA GGCAGTGATG
TTCGATGGCA GTACTAAGAC TGTAACTTAT GATGCCGCCC GCGGCGAGAG TCGTGGCCCA
CGTAAACGCA ATCAAACTAC TGAACTGGGT GATTGCGTCG ATTGCAACCT GTGCGTCGAT
GTTTGCCCCA CGGGCATAGA CATACGTAAC GGCCTGCAAT ATGAATGCAT TAACTGCGGC
GCCTGCGTCG ATGCCTGCAA TCAAACCATG GATCAATTTG GCTATCAGTC AAACCTGATT
AGCTTTATCA GCGAAAATGA ACTCAAAGGT GAGGCTAAGC CTTTCTGGTG TTCAGCCCGT
TTTGTGTCCT ACGGCCTAGC CCTATTCACC TTCATTATTG TGGCCCTTAT CGACCTATCC
AGCATCAGTG AAACTCAGTT TAATATTCTT CGCGACAGGC AAAGCCTCTA CCGTGAGGTG
GGCATGGCAG AAATAGAAAA TACCTACCAG TTAAGAATAC GTAACAAGAC CAAAACCATG
AAACGCTATC AGATAACCTT AGATAATCCG CAACGATTCA TACTCATGAC CCCAAGTGTG
ATCCAAGTCT CTGCTGCAGA GCAGCTTGAA TACCCAGTAA CAGTCAAAGC CAAACTGGTA
GACCTAGACC ATGGACGGGA AGTGCTGCAA TTTTCGATTA TTGATATCGC AAAACCAGAA
CAAAATGTTA GCCAAAGCAG CAGTTTTTTC AGCCCAAGTA CTTAA
|
|---|
| Protein sequence | MTQQEQAFPN TEQKTYGASA GQIPIVNLPT GNGPSVRSVN LHTPTTKGGT AEGKIQFREQ
KGPFQQLRSL LNSMLVLIFF IIPFINYQGR QAILFDVNEQ QFHFFSLTLW PQDFTLLAWV
FIAAAFGLFF ITVFWGRVWC GFLCPQTAWT FMYVWIETRI EGSSNKRKLL DKAAWTSSKL
IKRSSKHSLW ALTALLTGCG FIGYFVPARE LYLDIFTLSG SFWVSSWVWF FAICTYLNAG
WMREQMCLHC CPYSRFQAVM FDGSTKTVTY DAARGESRGP RKRNQTTELG DCVDCNLCVD
VCPTGIDIRN GLQYECINCG ACVDACNQTM DQFGYQSNLI SFISENELKG EAKPFWCSAR
FVSYGLALFT FIIVALIDLS SISETQFNIL RDRQSLYREV GMAEIENTYQ LRIRNKTKTM
KRYQITLDNP QRFILMTPSV IQVSAAEQLE YPVTVKAKLV DLDHGREVLQ FSIIDIAKPE
QNVSQSSSFF SPST
|
|---|
| |