Gene Sden_2928 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_2928 
Symbol 
ID4019453 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp3494663 
End bp3495634 
Gene Length972 bp 
Protein Length323 aa 
Translation table11 
GC content46% 
IMG OID637956979 
Producttrans-hexaprenyltranstransferase 
Protein accessionYP_563929 
Protein GI91794278 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0142] Geranylgeranyl pyrophosphate synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000191483 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATTTAA ACGCCATTCG TGAGCTGGCT GAAACTGATA TGAAAGCAGT TGATCAGCTA 
ATATACCAAC AACTCGAATC TGATGTTGCC TTGATCAATC AATTAGCGTT TTACATCATC
AAAAGCGGTG GTAAGCGTCT TCGTCCTCTG TTAACCGTAT TAGCCTGTAG AGCCATGGGC
TATGAGGGCG ACAAACACCT AAAATTGGCC GCAATCGTTG AGTTCATTCA TACAGCATCT
TTACTCCATG ACGATGTTGT TGATGAATCT TTATTGCGCC GCGGCCGAGA AACTGCCAAC
GCGTTATTTG GTAATAGTGC CAGCGTGCTC GTCGGTGACT TTCTCTATAC TCGCTCTTTT
CAAATGATGA CAGAGTTAGA CAGCCTGCAC GTACTTAAAG TGCTGGCCAA CACCACCAAT
GTATTAGCAG AAGGGGAAGT GTTGCAGTTA ATGAATTGCA ATGACCCAAA CACCACTGAA
GCCAACTACA TGCGAGTCAT CTACTGCAAA ACCGCTAAAT TATTTGAAGC AGCAACCTTG
CTTGCCGGTG TACTGGCTGG TGCCAGTGTG GCTGAGCAAA TCGCACTGGG AGAATACGGT
AAATTCCTAG GCACGGCATT CCAACTGACC GACGATTTAC TCGATTACAC CGCCAGCAGC
GATGAACTGG GCAAAAATAT CGGCGACGAT CTCGCAGAAG GTAAACCCAC ATTACCGCTT
ATTTTTGCCA TGGAGCATGG CAGTGCTCAT GCCAAGGCAT TAATTAAGCA AGCCATCGAG
CAAGGGGATG GTACCCAAGC GATAGATGAG ATTGTAAAAG CCCTTCATGA CTCAGGTGCA
TTAGAATACA CTAAGAACAA GGCCATAGAA GAAGCTGAGA AGGCCATAGC GGCATTATCT
TGCGTTAAGG ATAGTCGGCA TAAGGATGCG CTGATTTCCT TGGCTAATAT CGCAGTAAAC
CGCAGCAACT AA
 
Protein sequence
MDLNAIRELA ETDMKAVDQL IYQQLESDVA LINQLAFYII KSGGKRLRPL LTVLACRAMG 
YEGDKHLKLA AIVEFIHTAS LLHDDVVDES LLRRGRETAN ALFGNSASVL VGDFLYTRSF
QMMTELDSLH VLKVLANTTN VLAEGEVLQL MNCNDPNTTE ANYMRVIYCK TAKLFEAATL
LAGVLAGASV AEQIALGEYG KFLGTAFQLT DDLLDYTASS DELGKNIGDD LAEGKPTLPL
IFAMEHGSAH AKALIKQAIE QGDGTQAIDE IVKALHDSGA LEYTKNKAIE EAEKAIAALS
CVKDSRHKDA LISLANIAVN RSN