| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2834 |
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| Symbol | |
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| ID | 4019353 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 3382604 |
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| End bp | 3384457 |
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| Gene Length | 1854 bp |
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| Protein Length | 617 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637956880 |
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| Product | RNA polymerase sigma factor RpoD-like protein |
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| Protein accession | YP_563836 |
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| Protein GI | 91794185 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0916822 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATATCTA TGGATCACAC TCCGCAGTCG CAACTAAAAT TGTTGCTCGC TAAAGGTAAA
GAGCAAGGTT ACTTAACCTA TGCTGAAGTG AACGACCACT TACCAGCTGA CATGGTCGAT
TCTGATCAGA TTGAAGATAT TATCCAGATG ATAAATGACA TGGGTATTCG GGTGTTTGAA
GAAGCGCCAG ATGCCGATGA CATGATGATG TCAGAAGACA ACACAGACGA AGATGCCGCT
GAAGAAGCCG CAGCTGCGCT AGCAACAGTT GAAAGTGAAC TTGGTCGTAC TACTGACCCG
GTACGCATGT ACATGCGTGA AATGGGCACA GTGGAATTGC TGACTCGTGA AGGCGAAATT
GTTATCGCTA AGCGTATCGA AGAAGGCATT AACACGGTCC AAAGTTCAGT GTCTGAATAT
CCTCAAGCGA TCGCCATGAT CCTCGAGCAA TTCGACCAAT ACGAAGCTGA TGAACTGCGC
CTGACAGATA TTATCGCTGG ATTTATCAAC CCTGACGAAG ATGACGTCGC CCCCACCGCC
ACCAATATCG GCTCAGAATT ATCCGAAGCA CAGCAAAACG ATGACGATAA TGACGATGAT
GATGATGACA GCGATGACGA AGAAGAGGAA GAAGGCAACA AAGGGCCTGA TCCTGAGCAA
GCCAAAGAAA AATTCACTGA GCTAAGAGAA GTCTATGAAA AAGGCTTAGC CGTCATTGCG
GAAAAAGGCC GTGATCACCC AGAAGCGATT GGCGCGCTAT TCGTTATTGG TGAGTTATTC
AAAGAATTCC GTTTAGTGCC TAAGCAGTTC GACCGCTTAG TGAAAAGCAT GCGCACCATG
ATGGACAGAG TCCGTGTGCA AGAGCGCCTA ATACTTAAGT TGTGTGTTGA ACAGGCTAAA
ATGCCTAAGA AGAATTTCGT TAAGGCTTTC ACCAGCAACG AAACGAACTT AGATTGGTTC
AACAAAGAAA TGAACAGCAA CAAGCCTTAT GCTGATGCAC TTAAAGCCGT TGCTCATGAC
GTTAACCGTT GCAGCAGCAA GCTGACTGCC ATTGAATTAG AAACCGACCT GACCATTTCT
AGCATCAAAG ACATTAACCG TCGTATGTCT ATCGGTGAAG CCAAGGCTCG CCGTGCGAAA
AAAGAAATGG TTGAAGCCAA CTTACGTTTG GTGATTTCGA TTGCGAAAAA ATACACCAAC
CGTGGTTTAC AATTCTTGGA CTTAATCCAA GAAGGTAACA TTGGCTTGAT GAAGGCCGTG
GATAAGTTCG AATACCGTCG TGGTTACAAG TTCTCGACCT ATGCGACTTG GTGGATCCGT
CAGGCAATCA CGCGTTCAAT CGCTGACCAA GCCCGTACTA TCCGTATTCC AGTACACATG
ATCGAAACGA TCAACAAGTT GAACCGTATT TCTCGTCAAA TGCTTCAAGA AATGGGCCGT
GAGCCGTCTC CTGAAGAATT GGCAGAACGT ATGATGATGC CTGAAGATAA AATTCGTAAG
GTGCTGAAAA TCGCTAAAGA ACCTATTTCA ATGGAAACCC CAATCGGTGA CGATGAAGAT
TCCCATTTAG GTGACTTTAT CGAGGATACC ACCCTCGAGT TACCACTGGA CTCAGCCACC
AGCGAAAGTC TAAAGAACGC CACTCATGAA GTACTCGCTG GCCTGACAGC CCGTGAAGCT
AAAGTACTGC GGATGCGTTT TGGTATCGAC ATGAACACTG ACCACACGCT AGAAGAAGTG
GGCAAGCAAT TTGATGTTAC CCGTGAACGT ATTCGTCAAA TCGAAGCCAA GGCATTACGC
AAGTTACGCC ACCCTTCTCG CTCAGAGATC TTGAAATCAT TCTTAGACGA ATAA
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| Protein sequence | MISMDHTPQS QLKLLLAKGK EQGYLTYAEV NDHLPADMVD SDQIEDIIQM INDMGIRVFE
EAPDADDMMM SEDNTDEDAA EEAAAALATV ESELGRTTDP VRMYMREMGT VELLTREGEI
VIAKRIEEGI NTVQSSVSEY PQAIAMILEQ FDQYEADELR LTDIIAGFIN PDEDDVAPTA
TNIGSELSEA QQNDDDNDDD DDDSDDEEEE EGNKGPDPEQ AKEKFTELRE VYEKGLAVIA
EKGRDHPEAI GALFVIGELF KEFRLVPKQF DRLVKSMRTM MDRVRVQERL ILKLCVEQAK
MPKKNFVKAF TSNETNLDWF NKEMNSNKPY ADALKAVAHD VNRCSSKLTA IELETDLTIS
SIKDINRRMS IGEAKARRAK KEMVEANLRL VISIAKKYTN RGLQFLDLIQ EGNIGLMKAV
DKFEYRRGYK FSTYATWWIR QAITRSIADQ ARTIRIPVHM IETINKLNRI SRQMLQEMGR
EPSPEELAER MMMPEDKIRK VLKIAKEPIS METPIGDDED SHLGDFIEDT TLELPLDSAT
SESLKNATHE VLAGLTAREA KVLRMRFGID MNTDHTLEEV GKQFDVTRER IRQIEAKALR
KLRHPSRSEI LKSFLDE
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