| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2738 |
|---|
| Symbol | |
|---|
| ID | 4019257 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 3280188 |
|---|
| End bp | 3281468 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637956784 |
|---|
| Product | threonine synthase |
|---|
| Protein accession | YP_563740 |
|---|
| Protein GI | 91794089 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0498] Threonine synthase |
|---|
| TIGRFAM ID | [TIGR00260] threonine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00144538 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAATTAT ATAATTTAAA GCATGTGTCG GAGCGAGTAA ATTTCAGTCA AGCCTTGCAG
TTGGGATTAG GTAAGGACAG AGGGCTATTT TTCCCAAGCC AGATCCCCAA ACTTGATGAC
ATGGACGCCA TCTTAGCGCT GCCTTTTGTC GCCCGTTGTA AGACAATCCT CGGCGCTTGG
CTCAGTGATG AGTTAGGTCA AAATCAGGTT GATATGTTAG TGGAGCAGGC GTTTAATTTC
TCACTGCCTT TGACTCGTGT GGATGACAAT AGGGCCTGTC TCGAACTTTT TCATGGTCCA
ACCTTGGCCT TTAAAGATTT CGGCGCTCGT TTTATGGCTC AGTGCATTAG CGCCTTAGCC
GAAGATAAAC GTCTGACCAT TTTAACCGCG ACATCAGGTG ACACTGGGGC CGCGGTGGCC
GATGCATTTT TCGGCCTAGA TAAGGTACAA GTGGTGGTAC TTTATCCTAA GGGCAAAATA
AGTCTGCTGC AGGAGAAGAT GTTTACTACC TTAGGCGAAA ATATCCACAC TATAGCGGTA
GAGTCTGACT TTGATGCTTG TCAGGAACTG GTTAAACAAT CTTTTGAGGA TAATGAACTT
AGGCAAACGT TAGGGCTTAA TTCTGCCAAT TCTATCAATA TCAGCCGTTT GTTGGCGCAG
ATTTGTTATT ACTTTGAAGC TGTCGCTCAA GTAAGGCAAT ACAGCGATAA AGACATCGTT
GTCTCAGTGC CCAGTGGCAA TTTTGGTAAT TTAACCGCAG GGCTATTTGC CAAGGCCATG
GGCTTACCCA TAGCGCGCTT TATTGCTGCC ACTAACAGCA ACGATACTGT GCCTCGTTAT
CTTGTTAATG GTCAATGGGT CCCTCATACC ACGGTTGCCA CCTTATCCAA TGCGATGGAC
GTCTCAGAGC CAAGTAATTG GCCAAGAGTT GAGGCGATAT GTGCAGCGAT GGGCTGGCCG
TTAAGTGTGA TAAGCGGTGT TATGGTGGAT GAAGTCCAAA CAGCAGCATC ACTGACCTCT
CTGGCAAGCT TAGGCTACCA ATCAGAGCCC CACGCCAGTA TTGCTGCTCA GGGGCTGGTT
ACGCTTAAGG AACATGAAAC CGGCATATTT TTAGGTACGG CCCATCCGGC TAAATTTAAG
GATGTAGTCG ACAGCATATT GGGCACAGAC TTAGCCTTGC CTCAAGCCTT ACGCGCCGTG
GAAGCTAAAA CTATCCTTTC TAGGCCCCTT GCAGCGGACT TTGGTCTGCT TAAATCTCAT
TTGCTGCAAA AACTAGCCTA A
|
|---|
| Protein sequence | MELYNLKHVS ERVNFSQALQ LGLGKDRGLF FPSQIPKLDD MDAILALPFV ARCKTILGAW
LSDELGQNQV DMLVEQAFNF SLPLTRVDDN RACLELFHGP TLAFKDFGAR FMAQCISALA
EDKRLTILTA TSGDTGAAVA DAFFGLDKVQ VVVLYPKGKI SLLQEKMFTT LGENIHTIAV
ESDFDACQEL VKQSFEDNEL RQTLGLNSAN SINISRLLAQ ICYYFEAVAQ VRQYSDKDIV
VSVPSGNFGN LTAGLFAKAM GLPIARFIAA TNSNDTVPRY LVNGQWVPHT TVATLSNAMD
VSEPSNWPRV EAICAAMGWP LSVISGVMVD EVQTAASLTS LASLGYQSEP HASIAAQGLV
TLKEHETGIF LGTAHPAKFK DVVDSILGTD LALPQALRAV EAKTILSRPL AADFGLLKSH
LLQKLA
|
|---|
| |