| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2725 |
|---|
| Symbol | |
|---|
| ID | 4019244 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 3263601 |
|---|
| End bp | 3265160 |
|---|
| Gene Length | 1560 bp |
|---|
| Protein Length | 519 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637956771 |
|---|
| Product | integral membrane protein MviN |
|---|
| Protein accession | YP_563727 |
|---|
| Protein GI | 91794076 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0728] Uncharacterized membrane protein, putative virulence factor |
|---|
| TIGRFAM ID | [TIGR01695] integral membrane protein MviN |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000000329749 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAGTAAAA AGTTAATTAA GTCAGGGATC ATTGTTAGCG CTATGACGCT GATTTCTCGT
GTATTAGGCC TAGTTAGAGA CATAGTCATT GCTAACTTAA TGGGCGCAGG AAGCAGTGCG
GATGTGTTCT TTTTTGCTAA TAAAATCCCT AATTTTTTAA GGCGTTTATT TGCAGAAGGT
GCATTTGCGC AAGCTTTTGT GCCGGTATTA ACTGAATATC AAGAAAAGAA AACCCCAGAA
GAAACTCGCG AGTTGTTAAG TAAGGTGGCC GGAACCTTAG GTTTGTTGGT CACCCTGGTG
ACATTATTTG GCGTTATTGG ATCACCAATC TTAGCGGCCT TGTTCGGCGG TGGTTGGTTT
CTTGATTGGC TAAATGATGG ACCTAATGCC GAAAAGTTTG AACTCGCATC CTTGATGCTG
AAAATCACCT TCCCTTATTT GTGGTTTATC ACTTTTACCG CCCTTGCGGG TTCAATTTTA
AATACCAGAG GGCGTTTTGC GGTTTCTGCC TTTACACCGG TATTTTTAAA TATTTCCGTA
ATTGCCATCG CCTTGTATTT AGCCCCTCGA ATGGAACAAC CTGAAATTGG GCTTTCTTGG
GGCATATTTG TTGGCGGCTT GATTCAATTT TTATTTCAAA TTCCCTTTTT GATTAGAGAG
AAAGCCTTAG TTAAACCCAG TTGGGGCTGG CATCACCCTG GGGTGGTTAA AATTCGCACC
TTGATGATCC CGGCGCTGTT TGGGGTGTCG GTATCGCAAA TTAACCTCTT GTTTGACACC
TTTATTGCCA GTTTCTTAAT GACAGGTTCG ATTAGTTGGC TGTATTACTC AGATAGATTA
TTAGAATTTC CCCTCGGGCT TTTCGGAATT GCTATTGCCA CTGTGATTTT ACCGGCGCTT
TCACGCAATT TTGTTAATGC CGAAGGAGAA GGCTTTACTC GCACTATGGA TTGGGGGGTG
AAAGCGATTT TCTTATTAGG CATGCCTGCC ATGTTTGGCT TAATCGTATT AGCCAAACCT
ATGTTAATGG TGCTGTTTAT GCGTGGTGCT TTTAGTCTTG AGGATGCCAC TATGGCATCT
TATAGTTTGA TGGCCTATGG TGCTGGCTTA CTTAACTTCA TGTTAATTAA AGTGTTAGCC
CCTGGGTATT ATTCTCGTCA TGACACTAAA ACCCCAGTGC GTTATGGCAT TATTGCTATG
GTGAGCAATA TGGTACTTAA CCTAATCTTT GCCGTGCCTT TTGGTTATGT GGGGCTGGCA
ATCGCCACCT CTCTGTCAGC CTTACTCAAT GCAGGACTCT TGTACCGAGG GCTGCATTTG
CAAAATATAT ACAGAGTCAG TCCAGAGACA TTGACGTTTA TCGGTAAGAT AACCGCAGCA
ACCGCAGTCA TGGCGTTGAG TATTTACTGC TTTGGTCCTG TTGAGCAGCA GTGGCTTGAT
TGGCATACTG GCGAGCGGTT AGTGGCTTTA AGTGCGTTAA TTACCGCCGG TGCGCTGAGT
TATTTTGTGG TACTGCGACT GCTTGGAGTT AAACCATGGA AATTGAAAAA GGCCAGCTGA
|
|---|
| Protein sequence | MSKKLIKSGI IVSAMTLISR VLGLVRDIVI ANLMGAGSSA DVFFFANKIP NFLRRLFAEG
AFAQAFVPVL TEYQEKKTPE ETRELLSKVA GTLGLLVTLV TLFGVIGSPI LAALFGGGWF
LDWLNDGPNA EKFELASLML KITFPYLWFI TFTALAGSIL NTRGRFAVSA FTPVFLNISV
IAIALYLAPR MEQPEIGLSW GIFVGGLIQF LFQIPFLIRE KALVKPSWGW HHPGVVKIRT
LMIPALFGVS VSQINLLFDT FIASFLMTGS ISWLYYSDRL LEFPLGLFGI AIATVILPAL
SRNFVNAEGE GFTRTMDWGV KAIFLLGMPA MFGLIVLAKP MLMVLFMRGA FSLEDATMAS
YSLMAYGAGL LNFMLIKVLA PGYYSRHDTK TPVRYGIIAM VSNMVLNLIF AVPFGYVGLA
IATSLSALLN AGLLYRGLHL QNIYRVSPET LTFIGKITAA TAVMALSIYC FGPVEQQWLD
WHTGERLVAL SALITAGALS YFVVLRLLGV KPWKLKKAS
|
|---|
| |