Gene Sden_2687 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_2687 
Symbol 
ID4019204 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp3217617 
End bp3218819 
Gene Length1203 bp 
Protein Length400 aa 
Translation table11 
GC content48% 
IMG OID637956731 
Productputative oxygen-independent coproporphyrinogen III oxidase 
Protein accessionYP_563689 
Protein GI91794038 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases 
TIGRFAM ID[TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000667437 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTGCAGT TGCCGCCATT AAGCCTCTAT ATCCATATTC CTTGGTGCGT TCAAAAGTGC 
CCTTATTGTG ATTTTAATTC CCACGGTCAG CATGGGGAAT TACCGCAACA AGCTTATGTG
GATGCCCTAT TGGCCGACCT AGCTCAAGAC ATGGATTATG TTCAAGGCAG GCAATTGCAC
ACCATTTTTA TCGGTGGCGG CACCCCCTCT TTGTTCGACG CTAAGCAAAT TGAGCGACTG
CTCCTTGGCG TCCAAGCGCT TATCCCTTTT GAACGAGATA TAGAAATCAC CATGGAAGCC
AACCCTGGCA CCCTAGAACA TGATGATTTT AGCGCCTACA GGGCAGCAGG GGTGACTCGA
CTCTCTATCG GGGTGCAGAG CTTTGCCAAA GATAAGCTAA ATTTACTTGG GCGAATTCAC
GACCAAAATG AAGCCGTGGT TGCGGCGCAA AAAGCCAAGG AGGCCGATTA CTTAAGTTTT
AATCTCGATT TGATGCACGG CTTACCTAAC CAAAGCTTTA GTGAAGCCAT GCATGATATC
GATACCGCCG TCTCTCTGGC GCCGCCGCAT TTGTCTTGGT ATCAGCTCAC CATAGAGCCC
AATACTTTAT TCCACTCTAA ACCGCCGCAA TTGCCAGATG ATGAAGACTT ATGGCAGATT
TATCAGCAAG GTCAGCAAAA GCTAGCCGCC TTAGGTTATG AGCAATATGA GATATCAGCC
TATGCTAAGC CTGGCTTTCA ATGCCGACAT AATCTTAACT ACTGGCAGTT TGGCGATTAT
TTAGGCATAG GCTGCGGCGC ACACGGTAAG ATAACCTTAA TGGATGAGAC CAGCGTTATC
CGCACCGTTA AGATAAAACA CCCTAAGGGT TACCTTGCTA GCGCTGAAAC CGCGCTTTCT
GCGAATAAAT CACATGAAGC TAGTCCGTCA ACGGCTAATA AGGCTAATCA CTTCGCCGCA
TCAGTGACGC CAATCTTAAG CGAAGACATG GGACTGGAAT ACTTGATGAA CCGCTTAAGG
CTAATGACGC CCATCCCTAA GACTGAATTT GAGCAGCGCA CCGGCCAAGC CCATAGCAGT
CTTGATATTG GCATGGCGAA AGCAGAGTCT CGCGGGCTAA TCACTCAGGA TGAGACTCAC
TGGCAGCTGA CCAGTAAAGG CCATATGTTT GTTAACGATA TTTTGTCCCA ATTTCTTGAT
TAG
 
Protein sequence
MLQLPPLSLY IHIPWCVQKC PYCDFNSHGQ HGELPQQAYV DALLADLAQD MDYVQGRQLH 
TIFIGGGTPS LFDAKQIERL LLGVQALIPF ERDIEITMEA NPGTLEHDDF SAYRAAGVTR
LSIGVQSFAK DKLNLLGRIH DQNEAVVAAQ KAKEADYLSF NLDLMHGLPN QSFSEAMHDI
DTAVSLAPPH LSWYQLTIEP NTLFHSKPPQ LPDDEDLWQI YQQGQQKLAA LGYEQYEISA
YAKPGFQCRH NLNYWQFGDY LGIGCGAHGK ITLMDETSVI RTVKIKHPKG YLASAETALS
ANKSHEASPS TANKANHFAA SVTPILSEDM GLEYLMNRLR LMTPIPKTEF EQRTGQAHSS
LDIGMAKAES RGLITQDETH WQLTSKGHMF VNDILSQFLD