| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2657 |
|---|
| Symbol | |
|---|
| ID | 4019174 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 3188577 |
|---|
| End bp | 3189347 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 637956701 |
|---|
| Product | nucleotidyl transferase |
|---|
| Protein accession | YP_563659 |
|---|
| Protein GI | 91794008 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1208] Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) |
|---|
| TIGRFAM ID | [TIGR02623] glucose-1-phosphate cytidylyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTAT TATTATTAGC AGGTGGATTA GGGACACGGC TATCAGAGGA AACGGATCTT
AAACCTAAAC CTATGGTTGA GATAGGAGGT AAGCCGATCC TGTGGCACAT TATGAAAATG
TATTCGCAAC ATGGTTATAA TGAATTCGTT GTATTATTAG GTTACAAAGG TTATTACGTT
AAGGAATACT TTGCGAATTA CTTTTTACAT CAAAGTGACG TAACTATAGA TTTATCAACA
AATGAGATGA AAATTCAGAA AAACACATCC GAGCCATGGA CTGTGACTTT GCTCGACACT
GGTGTTAATA GCATGACCGG CGGGCGTGTT AAAAGAGCGC AAGAGATCAT AGGTAATGAA
CCATTCATGT TAACTTATGG CGATGGAGTT TCGGACGTTA ATATTACTGA ATTAGTCGAT
TTTCATAAAA GTCATGGAAA GGCTATAACT ATGACATCTG TGCAACCAGA TGGTCGTTTT
GGGGCTATTG AAATTGAAGG GAATAGAATT ACAAATTTCC TTGAAAAACC AAAAGGTGAT
GGCTCTTGGA TTAATGGTGG ATTCTTCGTT TGTGAGCCAT CAGTATTTGA TTATATTAAA
GAAGGCGATT CAACTGTTTT CGAGCAAGCA CCTTTACAAA ATTTAGCAAA AGATGGAGAG
TTATTTTCCT ATAAACATAA TGGTTTTTGG AAGTGTATGG ATACGCTAAA AGATAAAAAT
GAGTTAGATG CCATGCTACA GTCAAATAAA GCTAAGTGGA AGAGTTGGTA A
|
|---|
| Protein sequence | MKVLLLAGGL GTRLSEETDL KPKPMVEIGG KPILWHIMKM YSQHGYNEFV VLLGYKGYYV
KEYFANYFLH QSDVTIDLST NEMKIQKNTS EPWTVTLLDT GVNSMTGGRV KRAQEIIGNE
PFMLTYGDGV SDVNITELVD FHKSHGKAIT MTSVQPDGRF GAIEIEGNRI TNFLEKPKGD
GSWINGGFFV CEPSVFDYIK EGDSTVFEQA PLQNLAKDGE LFSYKHNGFW KCMDTLKDKN
ELDAMLQSNK AKWKSW
|
|---|
| |