| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2645 |
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| Symbol | |
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| ID | 4019162 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 3175532 |
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| End bp | 3177481 |
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| Gene Length | 1950 bp |
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| Protein Length | 649 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637956689 |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_563647 |
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| Protein GI | 91793996 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTGGGC TTAAAATGGA TTTTTTACAA AGCATGTTTA GCTTAAAGCG TGCCCATAAG
CGTGCTGTGA GCGTTACGAT TGACTCTCTT TTCCTGTGTG TCGCATTCTG GGCAGCGTTA
TTAGTTAGAG TTGATGATGT TAATGTGTTG GTTAATTCAC AATATTGGCT ATTACTTATA
TTGGTCGTTC CCTTAAGTAT CATAGGCTTT ATCAAATTTG GTCTATATCG CGCAGTGCTT
AGGTACATGG GGTTACAAGC ACTCACGGCC ATTTTATTAG GCGTAATAAT CTCTACGATC
GCCTTAGTGT TAATTGCTTA TTATACCGAT GCACAACTCC CAAGAACTGT GCCTATCATT
TATGCTGCGT TTGCATTAGT TTTTGTGGGC GGCACTCGTG CTATGGTTCG CTCTCTTGTT
GGCTCTGGCA TGAAGCGTAA TGGTGAGCCG GTAATCATTT ATGGTGCAGG AGTGAGTGGT
CGCCAACTGG TTATGGCATT GGTGCAAAGC CATGAGTATT ATCCCTTTGC TTTTGTTGAT
GATGATGAAG CCGTACAAGG TTCTGTTATT CAGGGAGTAC ATGTTCATTC TCCTTCTATC
ATTAAAAAGT TAATTAAGCA GAAAGCGGCA ACAAAAGTAT TATTGGCAAT TCCTAGCGCT
TCTAGATCCA GGCGACAGGA GATATTACTT CAGTTAGAGC CATTATCGGT ACAAGTACTC
ACTTTGCCTG CGATGGCTGA TCTGGTTAGT GGTAATAAGC TCTATAGCGA CATTAAAGAA
GTCGAAATCG ATGACTTATT AGGCCGTGAT TCGGTGACTC CAAGGCAAGA TCTATTAACC
GCGAACATTA AAGATAAAGT CGTCATGGTA ACTGGCGCTG GCGGTTCTAT TGGTTCAGAA
CTCTGTCGTC AAATTTTAAA GCAAGCGCCT AAAAAGTTAG TTCTCTTTGA GCTGTCTGAA
TTTGCGCTCT ATGCCATCGA ATCAGAACTA ACAGCTACAG CGATTGAATT AGGGTTAACA
GTACGCATTT TACCTATGAT GGGCTCGGTA CAAAAAGAGA ATCGGGTTCA GGCGGTAATG
GAAGCATTTG GGGTACAAAC CGTATACCAC GCAGCAGCCT ATAAGCATGT CCCCTTAGTT
GAGCACAATG TGGTAGAAGG CGTACGTAAT AATGTATTTG GTACCCTGTA TACTGCAAGA
GCCGCGATTA AAGCTAAGGT TGAGACATTC GTGCTTGTAT CAACGGATAA AGCCGTGCGA
CCCACCAATG TGATGGGTAC CACTAAGCGT ATGGCTGAGC TGGTATTGCA GGCTTTTGCC
AAAGAGAAAC ACAGTACGCG TTTTTGCATG GTGCGTTTTG GCAATGTACT CGGCTCATCA
GGCTCTGTAG TGCCTTTATT TCGCAAACAA ATTGCTAATG GCGGCCCTGT TACTGTCACG
CACCCCGAAA TTACCCGCTT CTTTATGACA ATACCCGAAG CCTCTCAACT TGTTATCCAG
GCCGGCGCTA TGGGTAAAGG CGGAGATGTG TTTGTACTGG ATATGGGAAA GTCGGTTAAA
ATTGTCGATT TAGCCACTAA AATGATCCGT TTAAGCGGCT TTGAAGTGAA GAACGAATTA
AATCCTGATG GTGATGTGGC CATAGAGTTT ACGGGTTTAC GTCCAGGCGA AAAACTCTAT
GAAGAGTTGC TTATTGGTGA TGATGTCACT GGCACCGAGC ACGAACGTAT CATGACTGCC
AACGAATTGT ATTTAAGCTG GGCTAATTAT TCAGCTATTT TGGATAAATT GGATTTAGCC
TGTCATGAGT TTGATCATGA GAGAATTCGC GCAATTCTGT TAAGCACCCC AACAGGCTTT
GCCCCTACTG ATGGTATTTG TGATCTGTTG TTTCAGCAGA GAGAAAAAAT ATCTGGTACT
AAAAAGAATG TGGTGAATTT CGTATTATGA
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| Protein sequence | MIGLKMDFLQ SMFSLKRAHK RAVSVTIDSL FLCVAFWAAL LVRVDDVNVL VNSQYWLLLI
LVVPLSIIGF IKFGLYRAVL RYMGLQALTA ILLGVIISTI ALVLIAYYTD AQLPRTVPII
YAAFALVFVG GTRAMVRSLV GSGMKRNGEP VIIYGAGVSG RQLVMALVQS HEYYPFAFVD
DDEAVQGSVI QGVHVHSPSI IKKLIKQKAA TKVLLAIPSA SRSRRQEILL QLEPLSVQVL
TLPAMADLVS GNKLYSDIKE VEIDDLLGRD SVTPRQDLLT ANIKDKVVMV TGAGGSIGSE
LCRQILKQAP KKLVLFELSE FALYAIESEL TATAIELGLT VRILPMMGSV QKENRVQAVM
EAFGVQTVYH AAAYKHVPLV EHNVVEGVRN NVFGTLYTAR AAIKAKVETF VLVSTDKAVR
PTNVMGTTKR MAELVLQAFA KEKHSTRFCM VRFGNVLGSS GSVVPLFRKQ IANGGPVTVT
HPEITRFFMT IPEASQLVIQ AGAMGKGGDV FVLDMGKSVK IVDLATKMIR LSGFEVKNEL
NPDGDVAIEF TGLRPGEKLY EELLIGDDVT GTEHERIMTA NELYLSWANY SAILDKLDLA
CHEFDHERIR AILLSTPTGF APTDGICDLL FQQREKISGT KKNVVNFVL
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