| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2593 |
|---|
| Symbol | |
|---|
| ID | 4019110 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 3103469 |
|---|
| End bp | 3105007 |
|---|
| Gene Length | 1539 bp |
|---|
| Protein Length | 512 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637956637 |
|---|
| Product | sigma-54 factor, interaction region |
|---|
| Protein accession | YP_563595 |
|---|
| Protein GI | 91793944 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG3283] Transcriptional regulator of aromatic amino acids metabolism |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00000497691 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTTGG AAGTCAGTTG TATCGACCGG GTCGGTTTAG CCAAGGATAT TTTGGTTATT
TTAGAAAGAT ATGGCATCAA TCTTATCGCC ATCGACGCCA GCAATCGCGG TTTCTTATAT
TTGCAATTTG CCGAGATTAG TTTTGAAACT TTGCGTGAAC TTATGCCGCT TATCCGTAAA
GTGGAAAGCG TGCACGATGT GCGCACTGTG TCCTTTATGC CTTCAGAGCA AGAGCATTAC
GCCTTAAAAA CCTTATTGCA AACCCTGCCA GACTCAGTTT TTTCTATCAA TGCCAAGGGC
CGAATTCGCA TAGTGAACGA ATCGGCATTA CTGACCTTAA GCATGGCCGA GCATGAAGTG
CTGGATGAAT CTCTCAACCA TTGGGTGCAA GGCTTTAACT TTGGTCGTTG GCTCAGTGAG
CCGCAAGTGT TGGCGCAGGC GACAAGGGTC ACCATAGGCA CGAACGAATA CCTTGCCGAA
ATGCTGCCGA TTTACCTGCC TGATGAAAAC GACAGCCAAA TTCTTGCCGG CGCCGTGGTG
TCGCTTAAAT CGCCTGCTCG AGTCGGCAAG CAATTTAATG CTTTGCAAAA TCAGACCACG
GGCTTTGAAA GCGTATTGGC CATGAGTGAC AAGATGAAAG ACGTGCTCAA GCAGGCAAGA
CGCATGGCTC AGCTGGATGC ACCGCTACTT ATCACAGGGG AAACCGGCAC AGGTAAGGAG
CTGATGGCTA GAGCCAGTCA CGATGCCAGC ATGCGCCGTG AAAAACCCTT TATTGCCATC
AATTGCGCCG CGCTTCCGGA CAGCGCCGCC GAAGAAGAGC TGTTCGGCTT TGTTAATCAA
GGCACTGTGG TGAAGCGTGG CTTGTTCGAA GAAGCCAGTG GCGGCACTGT ATACTTAGAT
GAAATTGCCG AAATGTCCAA AACGGCCCAG GTCAAGTTAC TGCGTTTTCT GCAGGATGGC
TGCTTTAGAC GCATTGGTGG CGATGAAGAA GTGCGCGCTG ATGTACGCAT CATTTGTTCG
ACCCAGAAAA ATCTCGCCGA GCTTTGTCAA ACCGATGAGT TTAGAGAAGA TCTTTATTAT
CGTATTCATG TGCTTAGCTA CCATATGCCC GCCCTTCGGG AGCGAAAGGT GGATGTCATC
CCACTGACAG AAATGTTCCT CGAGCACTAC AGTCAGCAGT TATCTAGCCC CTTAAGGCGT
ATCTCTGCCA GTTGCCGTGA TTACCTGTTC AGCTATGCCT GGCCTGGCAA TGTGCGCCAA
CTGAAAAATG CGGTCTTTAG GGCGGTGTCC ATGTGGGATG GCGCCACAGA GCTCACGGTA
GAGCAGCTTA AACTGCCATC CTATGCCGAA GGTTTTGGCT ATTTCGATGA AGAATTTGAA
GGTAGCCTAG ATGATGCTAT GAAAGAGTAC GAAGCCGGAT TGCTCAGACG CTTGTATCCC
GCTTATCCCA GTACCCGCCA ACTGGCGAAA AAACTCGGGG TATCCCATAC GGCGATTGCC
AATAAGCTTA GGGATTATCA GATAGTCAAG AAACGCTAA
|
|---|
| Protein sequence | MRLEVSCIDR VGLAKDILVI LERYGINLIA IDASNRGFLY LQFAEISFET LRELMPLIRK
VESVHDVRTV SFMPSEQEHY ALKTLLQTLP DSVFSINAKG RIRIVNESAL LTLSMAEHEV
LDESLNHWVQ GFNFGRWLSE PQVLAQATRV TIGTNEYLAE MLPIYLPDEN DSQILAGAVV
SLKSPARVGK QFNALQNQTT GFESVLAMSD KMKDVLKQAR RMAQLDAPLL ITGETGTGKE
LMARASHDAS MRREKPFIAI NCAALPDSAA EEELFGFVNQ GTVVKRGLFE EASGGTVYLD
EIAEMSKTAQ VKLLRFLQDG CFRRIGGDEE VRADVRIICS TQKNLAELCQ TDEFREDLYY
RIHVLSYHMP ALRERKVDVI PLTEMFLEHY SQQLSSPLRR ISASCRDYLF SYAWPGNVRQ
LKNAVFRAVS MWDGATELTV EQLKLPSYAE GFGYFDEEFE GSLDDAMKEY EAGLLRRLYP
AYPSTRQLAK KLGVSHTAIA NKLRDYQIVK KR
|
|---|
| |