| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2571 |
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| Symbol | |
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| ID | 4019088 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 3075452 |
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| End bp | 3077320 |
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| Gene Length | 1869 bp |
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| Protein Length | 622 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637956615 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_563573 |
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| Protein GI | 91793922 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000155122 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTTTG ACATATCTAA ATTTCCAGTA TTGGCTAAGG CCAATACTCC TGAAGACTTA
AGAAAGCTGC CTCAAAACAT GCTTTCTCAA GTCTCGACTG AATTACGTCA ATTTTTACTC
CAGTCTGTGG GTAATTCAAG TGGACACTTT GCCTCTGGCT TAGGAACAGT CGAACTCACC
GTTGCCTTGC ATTATGTCTA CAATACTCCG TTTGACCGCT TGATTTGGGA TGTGGGCCAT
CAGGCCTATC CCCATAAAAT TATGACCGGC AGACGGGATG AAATGCACAC CATAAGACAA
AAAAATGGCC TGCATCCTTT TCCATGGCGT GAAGAAAGTG AGTACGACAC CTTCAGTGTC
GGTCATTCTG GCACCTCAGT CAGTGCCGCC TTAGGCATGG CCATAGCAGC AGATAAAGAA
GCGGCGGGCC GCAAAGTGGT TGCCGTTATT GGTGATGGCG CCATGACAGG CGGCATGGTG
TTTGAAGCCA TGAACCACGC TGGTGACTTA CATAAAGACA TGTTAGTGGT GCTCAATGAC
AATGAAATGT CAATTTCAGA AAACGTTGGT GCTCTGAACA ATCACCTCGC TCAGCTGATG
TCAGGCAGGT TGTACACCAC AATACGTGAA GGCAGTAAAA AAGTCTTACA AGGCATGCCT
GTCATCAAAG AAATGGCCAA GCGTACCGAA GAACACCTTA AAGGCATGGT TGTCCCTGGC
ACCTTGTTTG AAGAATTGGG ATTTAACTAT ATTGGCCCAA TCGATGGCCA TGATGTGGAT
GCCTTAGTGG AAACCATGCG TAATATGCGC AGCCTTAAAG GCCCACAAAT CCTGCACATT
ATGACCAAGA AAGGTCGCGG CTATGAGCCA GCGGAGAAAG ATCCCATCGG CTGGCATGCT
GTGCCAAAAT TTGACCCAGA TCAGTTTAAA AAACCCGCAA CCAAGCCAGG TTTACCGACG
TTTTCTCAGG TGTTTGGTAA ATGGTTATGT GATGTTGCTG CCCAAGATGA CAAGCTGCTT
GCCATTACCC CAGCCATGCG CGAAGGCTCA GGTATGGTGG AGTTTTCCCA GCGTTTTCCT
GAGCAATATT TCGATGCGGC CATCGCAGAG CAGCATGCGG TAACCTTAGC GGCAGGCTTT
GCCTGTGAAG GCTTTAAAAG CGTGGTGGCA ATTTATTCAA CCTTCTTGCA GCGCGGTTAC
GATCAGCTCA TTCATGATGT AGCGCTGCAG CGTTTACCTG TGCTATTTGC CATAGATCGC
GGCGGCATAG TTGGCGCCGA TGGGGCCACT CATCAAGGTG CATTCGATTT AAGCTTTATG
CGCTGCATTC CCAATTTAGT CATCATGGCG CCAGCCGATG AAAATGAATG CCGTCAGATG
CTGTACACTG GCTATCGTTA TCAAGATGGG CCGACAGCGG TGCGCTATCC AAGGGGCTTT
GCCACTGGGG CTGAACAAAT TGAACAAATG ACCGCCCTTC CTATAGGAAA AGGTCGCGTC
TGTCGTCAAG GAAAGAAGAT TGCCATCTTA AACTTTGGCA CCACCTTAGC GTCTGCCTTA
GAGGTTGCCG AGCAGCTCGA TGCCAGCGTC GCCGACATGC GTTTTATCAA ACCTTTGGAT
GTGGATTTAT TGCATACTTT GGCGCTTGAG CATGATGTGA TTGTCACCAT TGAAGAAAAT
GCCATTATGG GCGGCGCAGG CTCTGGGGTA ATCGAGGCCT TGCATAAGCT TAAAATCTGC
AAACCTGTGC TACAAATTGG TTTGCCGGAT GAATTTATTA AGCACGGCGC ACCGGATGAA
ATCATCGCTG AACTCAGGTT AGATTCGAAA GGTATCCTCG CTCAGATCCA AGAGTACTTG
AGTGAATAG
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| Protein sequence | MSFDISKFPV LAKANTPEDL RKLPQNMLSQ VSTELRQFLL QSVGNSSGHF ASGLGTVELT
VALHYVYNTP FDRLIWDVGH QAYPHKIMTG RRDEMHTIRQ KNGLHPFPWR EESEYDTFSV
GHSGTSVSAA LGMAIAADKE AAGRKVVAVI GDGAMTGGMV FEAMNHAGDL HKDMLVVLND
NEMSISENVG ALNNHLAQLM SGRLYTTIRE GSKKVLQGMP VIKEMAKRTE EHLKGMVVPG
TLFEELGFNY IGPIDGHDVD ALVETMRNMR SLKGPQILHI MTKKGRGYEP AEKDPIGWHA
VPKFDPDQFK KPATKPGLPT FSQVFGKWLC DVAAQDDKLL AITPAMREGS GMVEFSQRFP
EQYFDAAIAE QHAVTLAAGF ACEGFKSVVA IYSTFLQRGY DQLIHDVALQ RLPVLFAIDR
GGIVGADGAT HQGAFDLSFM RCIPNLVIMA PADENECRQM LYTGYRYQDG PTAVRYPRGF
ATGAEQIEQM TALPIGKGRV CRQGKKIAIL NFGTTLASAL EVAEQLDASV ADMRFIKPLD
VDLLHTLALE HDVIVTIEEN AIMGGAGSGV IEALHKLKIC KPVLQIGLPD EFIKHGAPDE
IIAELRLDSK GILAQIQEYL SE
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