| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2524 |
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| Symbol | |
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| ID | 4019027 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 3015228 |
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| End bp | 3015920 |
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| Gene Length | 693 bp |
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| Protein Length | 230 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637956555 |
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| Product | pseudouridylate synthase |
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| Protein accession | YP_563527 |
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| Protein GI | 91793876 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.349394 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCCCATGA TAGAGAGCAC AATGAACCAC AGCCCAGTGA TGCAAGTCTT TAATTACCAG
CCACCGAGTA TTCCATGGCT TGACATACGC TATCTTGATA GAGACATCAT AGTCATCAAC
AAACCGTCGG GATTACTGTC AAACCCAGGC CGCGCACCTG AGACCTATGA TACCGCCATC
ACACGTTTAC AGCGCCTGTA TCCTGAGACG ATTCTCATTC ATCGGCTCGA TTGCGATACC
TCAGGCATTA TGATCTTTGC TCGCAATAAA AAAGCCGAAT CCAATCTCAA GACTCAGTTT
CAAAATAGGC AAGCCAAAAA GGTTTATATT GCCGAAGTCA GCGGATGTTT CGAACACCAA
GATGGCAAGG TCAATTTTCC TCTCGGGCCG GATCCAATGA CACCGCCTTT TCAGCAAGTC
ATAGAGTCAG GTAAGCCAGC GCTCACTTAT TACCGCTTAT TGGAGCACAG AGCGAGCACA
AGCCTAGTAG AATTAAAACC ACACACGGGT CGCACTCACC AACTTAGGGT GCACATGAAG
GCCCTAGGGC ACACCATTAT TGGGGATGAG TTTTACGGTG ACGAAACTGT TATAGCCGCC
AGTCACAGAC TGAATCTGCA TGCGCAATCT TTGACCCTAC TTCACCCTTT CAAGCAGATT
GAAATACAGT TTTTTAGCCA GCATCCGTTT TAA
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| Protein sequence | MPMIESTMNH SPVMQVFNYQ PPSIPWLDIR YLDRDIIVIN KPSGLLSNPG RAPETYDTAI
TRLQRLYPET ILIHRLDCDT SGIMIFARNK KAESNLKTQF QNRQAKKVYI AEVSGCFEHQ
DGKVNFPLGP DPMTPPFQQV IESGKPALTY YRLLEHRAST SLVELKPHTG RTHQLRVHMK
ALGHTIIGDE FYGDETVIAA SHRLNLHAQS LTLLHPFKQI EIQFFSQHPF
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