| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2514 |
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| Symbol | |
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| ID | 4019017 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 3000135 |
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| End bp | 3002147 |
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| Gene Length | 2013 bp |
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| Protein Length | 670 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637956545 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_563517 |
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| Protein GI | 91793866 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00116351 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAGCCA TTCAACTTCA AATCGCCAAT CTTGTTAACG AGCTTAACCA ACATAATATC
AAGTATTACG TTGATGATGC CCCAAGCGTT ACCGATGCCT ACTATGACAA GCTTATGCAG
CAATTGTTGG CCTTAGAGGC CGAGCACCCT GAGCTCATCC AAAGCGATTC TCCAAGTCGG
CGAGTTGGCG GTCATGCATT AGACAAGTTC TCACAAGTAA CTCATCTAAA ACCTATGCTC
AGTCTAGACA ATGCGTTTGA GCAGGCCGAC TTTGAAGCCT TCAATAAGCG CATCACAGAT
AAGGTCGGCA CTGTCGATTA TGTTTGTGAG CCTAAACTTG ATGGCTTAGC CGTATCTATC
ACCTATCGCA ATGGTCAGTT TGAGCGAGCG GCAACCCGAG GTGACGGTAC TGTGGGTGAG
GATATCACTG AGAATGTGCG CACCATTAAA TCGATTCCTA TGGGACTTCG CGGCGACGGT
TACCCTGAAT TGGTGGAAGT GCGCGGTGAA GTGTTTATGC CAAAAGCGGC CTTCGATGCC
CTTAATGCTC GTCAGCAGGC AAAAGGGGAT AAAACTTTCG TTAATCCTCG CAACGCCGCC
GCAGGCAGTT TGAGGCAGCT CGATTCTAAA ATTACCGCAT CGAGAGCCTT AGGCTTTTAT
GCCTATGCCC TTGGGGTGGT AGAGGGTGAA GTCCAGCCTA TGGAGCCAAG TCACTTTGGT
CAGCTAGCAC AGCTTAAACG TTGGGGCTTG CCCGTCAGTC AAGAGGTGAA GCTCTGTGAT
AGTTTAGAGA AAGTGTATGC TTATTATGAT GACATACTCA ATCGCCGCGG CCAGTTAAGT
TATGAAATCG ATGGGGTCGT GATTAAAGTC AATGCTATCC CTAAGCAGCT TAGCTTAGGC
TTTGTGGCCA AAGCGCCGCG CTGGGCCATC GCCTATAAGT TTCCCGCCCA AGAAGAGATG
ACGCTACTGG AATCGGTTGA TTTTCAAGTG GGCCGCACTG GCGCCGTCAC CCCAGTGGCA
AGGCTTCAAG CAGTATTTGT CGGCGGGGTA ACTGTGTCTA ACGCCACGTT ACACAATGCC
GATGAGATAG CCCGTCTAGG CGTAAAAATA GGCGATACTG TGATCATTCG CCGTGCTGGT
GATGTTATCC CGCAAATCGT TGCCATAGTG CCAGAAAAAC GTCCGCAAGA TGCACAAAAT
ATCGTCTTTC CAACACACTG CCCCGTTTGT CAAAGCTTGG TTGAGCGTCT GGAAGGTGAA
GCCGTGGCTC GCTGCAGCGG CGGCCTATTT TGTGAAGCGC AGCGAAAAGA GGCCATCAAG
CATTTTGCTT CTCGTAAGGC GCTTAATATT GATGGCATGG GCGATAAAAT TGTCGAGCAG
CTTATCGATA AGGAGCTTGT CCAATCTCCC GCTGATCTAT TCGGCCTAAC GGCCTCTATG
ATGACCATGT TAGAGCGCAT GGCGATGAAG TCGGCGACCA AACTCGTTGC AGCCATCGAT
GCCGCCAAAA CCACCACCTT AGCGCGCTTC ATATACAGTT TGGGTATTCG AGAGGTAGGC
GAAGCCACAG CAGCTAATCT TGCCAATCAT TTTAAAAGCT TAGCCGCAGT GCGTGAGGCA
GGGGTGGAGC AGCTACTGGA GGTGGCAGAT GTGGGAGAGA TTGTCGCCAA GCATATTCGC
CATTTCTTCG ACCAAGCACA TAACTTGGAG GTGGTTGATA AATTGCTCGC CGCCGGCATA
AATTGGCCTG AAATTACTGC GGTTGCCGAG GATGAATTAC GCTTGAAAGG TCAGACCTGG
GTGCTCACTG GCACCTTAAC TCAGCTTAAT CGCAACGAGG CAAAAGCCCA GCTACAAGCT
CTTGGAGCAA AAGTGGCTGG CAGTATATCC AAAAATACCG ATTGTTTGGT GGCAGGAGAA
GCAGCGGGCT CTAAGCTTGC CAAAGCCCAA GAGCTTGGGG TTAAAGTGAT TGATGAAACC
GAGTTGTTGG TTTTTCTTGG GCTCGCAGGT TAA
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| Protein sequence | MSAIQLQIAN LVNELNQHNI KYYVDDAPSV TDAYYDKLMQ QLLALEAEHP ELIQSDSPSR
RVGGHALDKF SQVTHLKPML SLDNAFEQAD FEAFNKRITD KVGTVDYVCE PKLDGLAVSI
TYRNGQFERA ATRGDGTVGE DITENVRTIK SIPMGLRGDG YPELVEVRGE VFMPKAAFDA
LNARQQAKGD KTFVNPRNAA AGSLRQLDSK ITASRALGFY AYALGVVEGE VQPMEPSHFG
QLAQLKRWGL PVSQEVKLCD SLEKVYAYYD DILNRRGQLS YEIDGVVIKV NAIPKQLSLG
FVAKAPRWAI AYKFPAQEEM TLLESVDFQV GRTGAVTPVA RLQAVFVGGV TVSNATLHNA
DEIARLGVKI GDTVIIRRAG DVIPQIVAIV PEKRPQDAQN IVFPTHCPVC QSLVERLEGE
AVARCSGGLF CEAQRKEAIK HFASRKALNI DGMGDKIVEQ LIDKELVQSP ADLFGLTASM
MTMLERMAMK SATKLVAAID AAKTTTLARF IYSLGIREVG EATAANLANH FKSLAAVREA
GVEQLLEVAD VGEIVAKHIR HFFDQAHNLE VVDKLLAAGI NWPEITAVAE DELRLKGQTW
VLTGTLTQLN RNEAKAQLQA LGAKVAGSIS KNTDCLVAGE AAGSKLAKAQ ELGVKVIDET
ELLVFLGLAG
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