Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_2506 |
Symbol | |
ID | 4019009 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | - |
Start bp | 2993085 |
End bp | 2994356 |
Gene Length | 1272 bp |
Protein Length | 423 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637956537 |
Product | exonuclease subunit SbcD |
Protein accession | YP_563509 |
Protein GI | 91793858 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0420] DNA repair exonuclease |
TIGRFAM ID | [TIGR00619] exonuclease SbcD |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.947885 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGCATTA TCCATACATC TGACTGGCAC CTTGGGCAAA ACTTTTATGG CAAGAGCCGG GCAAGGGAAC ACAGGGCCTT TATGGACTGG CTGCTGGAGC AAATTGCACT GCACCAAGTA GATGCGCTTA TTATTGCCGG TGATGTGTTC GATACCGGTA CGCCGCCAAG TTATGCTCGC GCCCTTTATA ATCAATTCAT AGTGCAGATG CAGCAAAGTG AGTGTCAGCT GATTATTTTG GGTGGCAATC ACGACTCTGT CTCCACTTTA AGTGAATCTA AAGAGTTATT AGCTTGCCTC AATGCTCGGG TAATACCAGG GGCTTTTGAT AACATCAGCG AGCATGTGTT TGAACTTAAC AATCGCAAAG GGGAGGTGGG CGCTATCATT TGTGCGCTGC CTTATTTGCG TCCAAGGGAC ATGATGCTCA GCCAGGCAGG CCAATCAGCA ACGGACAAAC AGCAACAGTT AGCTAATGCC ATTGCCGCGC TTTATCAAGA TAGTTTTGCC ATTGCCCAAA GCATTCAGGC AAAGCAACAA GCGCCAGTGC CTATCATTGC CACAGGTCAT TTAACCACGG TCGGGGCATC AACTTCAGAG TCGGTACGAG AAATCTATAT CGGCAGTCTC GATGCCTTCA ATGCCAACCT TTTTCCTGCT GCGGATTATA TTGCCCTTGG GCATATTCAC AGGCCACAGA AAATCGCTAA AACAGAGCAT ATACGCTACA GCGGCTCGCC GATCCCGTTG AGTTTTGATG AACTCAATGG TGACAAAAGC GTATTTTTAG TTGAGTTTGA TGGCATATCC CCAACCGTCA CTGGACTCGT CGTGCCAAAG TTTCAGCCCC TTGCCGTAAT AAAGGGCGAT TTAGCGCATA TAGAGACGCA AATTAATCGA CTCGCAGCAG ATGAAGCCAT TGAAGAGAGT GGCAATCAGT TAAACCACAA CACTTGGTTA AGTGTGGAGG TGAGTGAGCA AGATTATTTG TCTGACTTAC AGACTCGTAT AGGCGAGCTT ATTGACGGCA AACCATTGGA AGTGTTGCAG TTAAAAAGGG CTCGAACGGC AAGGAGCGCG CAGATTGAGC GAGTTGATAA CGAAATTCTC GCCGAATTAT CTGTGACTGA AGTCTTTGAG CGGCGTCTCG CACAAGAGGA GTGGTCAAGC GATGACCAGC TGAAAAAGCG TGGCCGAATT CAAGCTCAGT TTCAGCAAGT ATTAGCCAGC GTCGAAGAGT CGCTAATTCA AGGCGTGGAG GACAAAGAAT GA
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Protein sequence | MRIIHTSDWH LGQNFYGKSR AREHRAFMDW LLEQIALHQV DALIIAGDVF DTGTPPSYAR ALYNQFIVQM QQSECQLIIL GGNHDSVSTL SESKELLACL NARVIPGAFD NISEHVFELN NRKGEVGAII CALPYLRPRD MMLSQAGQSA TDKQQQLANA IAALYQDSFA IAQSIQAKQQ APVPIIATGH LTTVGASTSE SVREIYIGSL DAFNANLFPA ADYIALGHIH RPQKIAKTEH IRYSGSPIPL SFDELNGDKS VFLVEFDGIS PTVTGLVVPK FQPLAVIKGD LAHIETQINR LAADEAIEES GNQLNHNTWL SVEVSEQDYL SDLQTRIGEL IDGKPLEVLQ LKRARTARSA QIERVDNEIL AELSVTEVFE RRLAQEEWSS DDQLKKRGRI QAQFQQVLAS VEESLIQGVE DKE
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