| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2494 |
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| Symbol | clpX |
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| ID | 4018994 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 2973761 |
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| End bp | 2975041 |
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| Gene Length | 1281 bp |
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| Protein Length | 426 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637956522 |
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| Product | ATP-dependent protease ATP-binding subunit ClpX |
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| Protein accession | YP_563497 |
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| Protein GI | 91793846 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1219] ATP-dependent protease Clp, ATPase subunit |
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| TIGRFAM ID | [TIGR00382] endopeptidase Clp ATP-binding regulatory subunit (clpX) |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000000518551 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGGCGATA ACAAAAATAA CGGTGACAGC GGTAAATTGC TGTACTGCTC TTTTTGCGGA
AAAAGCCAGC ATGAGGTAAG AAAACTCATT GCGGGTCCTT CTGTATATGT GTGTGATGAA
TGTGTCGAGT TGTGTAACGA CATCATTCGC GAGGAGATCA AAGAGATCTC ACCTAAGCGT
GATCATGATA AATTGCCTAC GCCCCATGAG CTGCGTAATC ATTTAGATGA GTATGTCATA
GGGCAAGACA AGGCAAAAAA AGTCCTCGCG GTGGCTGTGT ATAACCATTA CAAACGTTTG
CGTAATGGCA CCACCAAAGA AGGCGTTGAA CTTGGCAAGA GTAATATCTT GTTAATCGGC
CCAACCGGTA GCGGTAAAAC CTTACTGGCA GAAACCTTAG CCCGTTCACT GAACGTGCCA
TTTGCCATGG CAGATGCCAC CACCTTAACC GAAGCGGGTT ATGTGGGTGA AGATGTTGAA
AACATCATTC AAAAGCTATT GCAAAAGTGC GATTACGATG TAGAAAAAGC TCAGCGCGGT
ATCGTCTATA TCGATGAAAT CGATAAAATC AGCCGTAAGT CTGACAATCC ATCCATTACT
CGTGATGTGT CGGGTGAAGG CGTGCAGCAA GCTTTACTTA AGCTGATTGA AGGTACTGTA
GCTTCTGTGC CTCCACAAGG TGGTCGTAAG CATCCTCAGC AAGAGTTTTT ACAGGTTGAT
ACCTCTAAAA TCTTATTTAT CTGTGGCGGT GCATTCGCAG GTCTTGAGAA AGTGATAGAA
CAGCGGGCGC ACACAGGTAC TGGCATAGGT TTTGGCGCAG AAGTGAAGGG CGAGCAAGAT
AAAGCCACAA TTTCACAAAT CTTAGGTCAA GTAGAACCTG AAGATTTAGT GAAATACGGT
CTTATCCCTG AGTTTATTGG TCGTCTACCT GTTGTGGCTA CCTTAACTGA ATTGGATGAA
TCAGCTTTGA TACAGATTTT GTCTCAACCA AAGAATGCCT TAACTAAGCA GTATGGCGCC
TTATTTGAGA TGGAAAATGT CGAGCTTGAA TTCCGCGAAG ATGCCCTTAA AGCTATCGCG
AAAAAAGCCA TGAGCCGTAA AACCGGTGCC CGTGGTCTGC GTTCAATCGT AGAAGGTATT
TTACTTGATA CCATGTACGA TTTGCCGACA GTCAAAGGTG TGGTGAAAGC CGTTATCGAT
GAGTCAGTGG TTAAAGGCGA GTCAGATCCC ATTCTTATTT ATGAGAATAA CGACACTAAA
GCGGCTTCAG GCGAACAATA A
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| Protein sequence | MGDNKNNGDS GKLLYCSFCG KSQHEVRKLI AGPSVYVCDE CVELCNDIIR EEIKEISPKR
DHDKLPTPHE LRNHLDEYVI GQDKAKKVLA VAVYNHYKRL RNGTTKEGVE LGKSNILLIG
PTGSGKTLLA ETLARSLNVP FAMADATTLT EAGYVGEDVE NIIQKLLQKC DYDVEKAQRG
IVYIDEIDKI SRKSDNPSIT RDVSGEGVQQ ALLKLIEGTV ASVPPQGGRK HPQQEFLQVD
TSKILFICGG AFAGLEKVIE QRAHTGTGIG FGAEVKGEQD KATISQILGQ VEPEDLVKYG
LIPEFIGRLP VVATLTELDE SALIQILSQP KNALTKQYGA LFEMENVELE FREDALKAIA
KKAMSRKTGA RGLRSIVEGI LLDTMYDLPT VKGVVKAVID ESVVKGESDP ILIYENNDTK
AASGEQ
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