| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2483 |
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| Symbol | |
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| ID | 4018983 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 2960672 |
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| End bp | 2961703 |
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| Gene Length | 1032 bp |
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| Protein Length | 343 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637956511 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_563486 |
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| Protein GI | 91793835 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG4168] ABC-type antimicrobial peptide transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0000884166 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTGGCGTT ATCTAATTAG ACGCATGGTG CTGTTCTTTG CCACCTCCTT AGTCATGATG
GCCGTGCTGT TTATTGCTAC CAGTTTGTTT CCGGTGGAAA AAAGTTATTC ACTGAGCGGC
ATTGAATTTC CAACGCCCCA GCAGCACGAG CAATTAACCC AAATCTATCA GCTCGATAAC
AACCTATTTA GTCAATTTAC CGCCTATTTG CGGGAGCGCC TCTCTGGAAA TTTAGGCATT
TCCAGTAACT CACAGCAAAG CGTGGCCGAT GAGCTGATGA GCGTGCTGCC CGCCTCCCTC
GAGTTGTCTC TGTTTGCAGG CGCCTTAGCG CTATTTTTTG GGGTGCCCCT TGGGGTGATT
GCGGCCCTAA CCAAAAACAA ACTAATTGAA ACCAGCATCT TGGCACTAAC ACTCACCGGC
TATTCAGTGC CCGTATTCTG GTTAGGCTTA ACCTTGTCCT TGTGGTTTGG GGTGAATTTA
GGCTGGCTAC CCATAGCCGG ACAAATTAAC TTGCTCTATG AAATTGAACC GGTAACAGGC
TTAATGCTTA TCGATACCTT GTTATCCGAC TCAGTCTTTG CCATGGCCGC CTTCGAAGAT
GCCTTATTGC ACATCATTCT GCCTGGCGTC ACTTTGGCTG TGCTGCCCTT TACCACTGTC
ATACGCATCA CACGTCAGGC GCTGCAAGAT GTGATGACGC AAACCTATAT TCAGGCCGCT
GAAGCGCGGG GACTTAGCAG CACGAAAATT CTCTTACGCC ATGCCCTACC TAATGCCTTT
ATCCCTGTAC TCAAGAGCTT TGGGCTTATG CTAGGTTCAT TTGCAAGCTA CGCCATTGTG
GTAGAAGTGA TTTTCGCCTG GCCTGGTGTT GGGGCTTGGT TAGTTTCAGG CATTTATCAA
CGAGACTACA CTGTCATTCA GGGCGGTATC TTATCTGTGT CGCTGCTCAT TATATTTTTA
AGTATTATCA TAGATTTAAT CTATACAGCC ATTAATCCTA TGAGTAAAAA GGAGCTGTAT
GCCGCGCATT AA
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| Protein sequence | MWRYLIRRMV LFFATSLVMM AVLFIATSLF PVEKSYSLSG IEFPTPQQHE QLTQIYQLDN
NLFSQFTAYL RERLSGNLGI SSNSQQSVAD ELMSVLPASL ELSLFAGALA LFFGVPLGVI
AALTKNKLIE TSILALTLTG YSVPVFWLGL TLSLWFGVNL GWLPIAGQIN LLYEIEPVTG
LMLIDTLLSD SVFAMAAFED ALLHIILPGV TLAVLPFTTV IRITRQALQD VMTQTYIQAA
EARGLSSTKI LLRHALPNAF IPVLKSFGLM LGSFASYAIV VEVIFAWPGV GAWLVSGIYQ
RDYTVIQGGI LSVSLLIIFL SIIIDLIYTA INPMSKKELY AAH
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