| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2482 |
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| Symbol | |
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| ID | 4018982 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 2958924 |
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| End bp | 2960672 |
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| Gene Length | 1749 bp |
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| Protein Length | 582 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637956510 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_563485 |
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| Protein GI | 91793834 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0259131 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGCGTC AATGGCAACT CACCTTAGTG TGCGCCTGTA GCCTGCTCCT TAGTGCTTGC
GGTAAAGCTC AGCTCCCTTC GGGGCTGGTG TATTGCAGTG AAGGGAACCC TGAAACCTTT
AACCCGCAGC TTATTACTTC AGGCACCACA GTCGATGCCA CCTCGAATCA AATTTATAAC
CGTTTAGTGG ATTATGATGT CACCAGCGCG AGCATAGTGC CAAGCCTTGC GACCCAGTGG
CAAGTGTCTG AAGATGGCCT TACCTATCGC TTTCATTTAC GCCGTGACGT ACATTTTCAT
CAATCCGAAC TTTTTACGCC AAGCCGATAT TTCAATGCCG ATGATGTACT CTTTTCCTTC
AATCGCATCA TCGACCTTGC GCATCCTTAC CACTACCTCA CTCGCACGGG TTATCCCTTC
TTTCAGAGTA TTAGCTTTGC CGAGTTAGTG GATAGCATTG AGAAAGTGAA TGACTTTGAA
GTGGTTTTTC ACCTAACACG CCCCGATGCC ACCTTTATTT CTAATTTAGC AACCGACTTT
GCGGTGATCT TATCCGCAGA GTATGGCCAG CAGCTATTAG CTCAAAACCA AGCGGAAAAA
CTTGATTTCT TTGCCATAGG CACAGGGCCC TTCAGACTCG ATGAATATGT TAAGAACGAG
TATATTCGCT ACAAGAAACA CCCTGACTTT TGGGGCGAGC CTCCCAAAAT TGAAATGCTG
GTGTTTGATA TCACTCCTAG AAGCTCGGTG CGCCTTGCTA AACTCATCAC CGGAGATTGC
AGCGTATCAG CACTGCCAAA AGCCACTGAA CTTGCCGTGG TCAAGCAGCA CCCCAACTTA
GTTATTGATA CTCAGGCTGG GCTAAATGTG GCATTTTGGG CATTTAACAC TCAAAAAGCC
CCCTTCAATG ATGTGAGAGT GCGCCAAGCG CTGGCCCATG CCGTGGACAA AGACAATATT
CTGCGGGTGG TGTACCACGA TACCGCCGTG GCTGCCACCG GCGTCTTGCC TCCCGCCTCT
TGGGCTTATA CCCCAAGCGT TATCCCTAAT GAATACAATC CAGGCAAGGC CCGCGCCCTG
TTAAAAGAAG CTGGGGTAAG CCGATTGCAA ATCGATATAT GGGCCATGCC CGTTGCCCGG
GTATATAACC CCAATGCACT GAAAACCGCC GAGCTTATTC AGGCTGACTT GGCGGCCATT
GGAGTGAAAG TCAATATTAT CAGTTTCGAT TGGAGTGTCT TTACTCAAAA ACTGGCGCTG
GCAGATTATG ACTCTGTGCT CATCGGCTGG AATGCTGACA ATAGCGACCC TGATAATTTT
TTCTCTCCCT TATTAAGCTG CGCAGCGTTT AACTCTAACA ATAACCGCTC ACGCTGGTGC
CTCCCCGCCT TCGATGAGTT GCTGGCCAAA GCGCAGGCCA CCACAGATAA AGGTGAGCGA
AAAGCCCTGT ATCAAGCCGC CGAAGCCATC ATTGCCGCAC AAGTACCCAT GGTAAACTTG
GCCCATGGGC CAAAAGTGGT GCTGCGTAAG AGTTCGCTTA TCTCTACCCA TAACGCGCCC
TATGGCGGTA TTTCATTCGC TGCTATGATG CTAGCACCCC CCCAGTTAAC GGCGCCCATT
GAGCCAGCTC AACACATTGA TCTTGAGTAT TCACCCATAA AAAGCGCCCC CATGAAGAGC
CCTGCCATTG AGAATCCGCC TAAAGAGCGC TCTGCCATAG AACAAGCACA AACTAAGGAG
CAAGGCTGA
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| Protein sequence | MMRQWQLTLV CACSLLLSAC GKAQLPSGLV YCSEGNPETF NPQLITSGTT VDATSNQIYN
RLVDYDVTSA SIVPSLATQW QVSEDGLTYR FHLRRDVHFH QSELFTPSRY FNADDVLFSF
NRIIDLAHPY HYLTRTGYPF FQSISFAELV DSIEKVNDFE VVFHLTRPDA TFISNLATDF
AVILSAEYGQ QLLAQNQAEK LDFFAIGTGP FRLDEYVKNE YIRYKKHPDF WGEPPKIEML
VFDITPRSSV RLAKLITGDC SVSALPKATE LAVVKQHPNL VIDTQAGLNV AFWAFNTQKA
PFNDVRVRQA LAHAVDKDNI LRVVYHDTAV AATGVLPPAS WAYTPSVIPN EYNPGKARAL
LKEAGVSRLQ IDIWAMPVAR VYNPNALKTA ELIQADLAAI GVKVNIISFD WSVFTQKLAL
ADYDSVLIGW NADNSDPDNF FSPLLSCAAF NSNNNRSRWC LPAFDELLAK AQATTDKGER
KALYQAAEAI IAAQVPMVNL AHGPKVVLRK SSLISTHNAP YGGISFAAMM LAPPQLTAPI
EPAQHIDLEY SPIKSAPMKS PAIENPPKER SAIEQAQTKE QG
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