| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2418 |
|---|
| Symbol | |
|---|
| ID | 4018916 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 2878729 |
|---|
| End bp | 2880552 |
|---|
| Gene Length | 1824 bp |
|---|
| Protein Length | 607 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637956445 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_563421 |
|---|
| Protein GI | 91793770 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4805] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.562363 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAG CCGTAATTGC TTTGACTATT GCCAGCTTGT TTAACGTCCA GGCCTGCTCA
AAAGCCCCTG AAAACAATCC GACTTTGGCG GCCGAATCGT CTCAAGCGCA AGCTGAAATA
TCAAGCTCTG CTCAGTACCA AGCCTTAGCT GATAGCTTCT TTAAAGACTA TTTAGCACTC
GAGCCAATCT ACGCCACTTT TGTGGGGGTT AATGACCACA ACAGTGAATT CGGCGGCGAT
TTAACTGAGG CATACCTTAA GGCGCGTCAC GAGCTGAATA CGCGCTATCT GGCTAAGGCT
ATGGACATAG ATGTGGCAAC ACTGCCCGAT GATCTGAAAC TAAGTCATGA TATGTTTGTG
TACGACAGAA AAATTGAATT AGTGAATGAA ACCTTTCCTG AGCGTTTTAT TCCTATAAAT
CAGTTCTACA GTAACCTTAT CACTATGATC CAGTTGGGGA GTGGCGAAAG TGCACAACCA
TTTGCCACAG TTGAAGATTA TCAAAATTGG TTGTCGCGCC TCGAAGGGTT TGTTGAGTGG
ATAGCATTGG CTCAGCAGCG GATGAATGAA GCCATCGCCA GTAAGGTGGT GTTGCCGAAA
GTACTGGTCG ATAGGATCAT TCCACAGCTT GATTCGCAAT TGGTTAATGA TGCAAAACAA
AGCCTATATT ATGCACCAAT CAATCAACTG CCTGTTGAAT TTACCGCAGA AGACAAAGCC
AAATTAACTG CCGATTTTCA GGCCATGATC AACGGCAAGT TATTGCCGGC TTTGACTGGG
CTGCGTGATT ATTTCAAGAC CACCTATTCT GCCAATGCGC GTGCCAGCGA TGGTTGGTGG
GGACTGCCTA ACGGAAAAGC TTGGTATCAG CATTTAGCCA ACAAACACAC CACGACGACT
ATGCCAGTGG AAGAAATCCA TCAGATGGGC CTTAGTGAAG TGGCACGAAT TTTAACTGAA
ATGGATAAAG TACGTGAACA AGTCGGCTTT AAAGGCGATT TAGCCGCATT CTTCAACGAA
TTATCTTCTA ACGACAAATT CTTTTTTAGT GACAGACAAG ACCTAGTTGA CGGTTATATG
GGGCTTAAAG ACAAAATTAA TGCCGTTTTG CCGGCGTATT TTAATGTCAT GCCAAAAGCG
GATTATGTGG TCAAGCCAGT TGAAGATTTT CGTGAGAAAT CGGCCGCGGG CGCCTCTTAT
GAATCACCAG CTGTAGATGG CTCGCGCCCT GGGGTGTTTT ATATCAACAC TTACAATTTA
AAGGCACAAC CTAAATGGGG CATGACGACA CTGTCATTGC ATGAAGCCGC GCCAGGGCAC
CATTTTCAAA TAGCTATCAA GCAAGAGTTG GAATCTGTAC CTGAATTCCA ACGTTTTCAA
GGTTACACGG CATTTGAGGA AGGCTGGGCA CTTTATGCCG AGTACTTAGG CATGGAAATG
GGGCTGTTTA GCGATCCTTA TCAGTACTTT GGTAAGCTTT CTGACGAAAT GCTTCGTGCC
ATGCGTTTAG TAGTGGACAC GGGTCTTCAT GCTAAGGGGT GGAGCCGTGA GCAAGCAATT
CAATATATGA AAGACAATTC CCCAATGGCT GAAACTGACA TAGTGGCAGA AGTCGAGCGT
TATATGGCAA TCCCCGGTCA GGCGCTTTCT TACAAGGTAG GTCAGCTCAC CATACTAAAA
TTAAGAGCTG AAGCCGAAGC TAAGCTTGGC GAAAAATTTG ATATTAAAGC TTTTCACGAC
CAAATTTTGA CTAGCGGTTC ATTGCCCATG GCTGTTATGG AGCAGAAAGT CGGTCGGTGG
GTGAAAGCCG AATTAGCTAA GTAA
|
|---|
| Protein sequence | MKKAVIALTI ASLFNVQACS KAPENNPTLA AESSQAQAEI SSSAQYQALA DSFFKDYLAL
EPIYATFVGV NDHNSEFGGD LTEAYLKARH ELNTRYLAKA MDIDVATLPD DLKLSHDMFV
YDRKIELVNE TFPERFIPIN QFYSNLITMI QLGSGESAQP FATVEDYQNW LSRLEGFVEW
IALAQQRMNE AIASKVVLPK VLVDRIIPQL DSQLVNDAKQ SLYYAPINQL PVEFTAEDKA
KLTADFQAMI NGKLLPALTG LRDYFKTTYS ANARASDGWW GLPNGKAWYQ HLANKHTTTT
MPVEEIHQMG LSEVARILTE MDKVREQVGF KGDLAAFFNE LSSNDKFFFS DRQDLVDGYM
GLKDKINAVL PAYFNVMPKA DYVVKPVEDF REKSAAGASY ESPAVDGSRP GVFYINTYNL
KAQPKWGMTT LSLHEAAPGH HFQIAIKQEL ESVPEFQRFQ GYTAFEEGWA LYAEYLGMEM
GLFSDPYQYF GKLSDEMLRA MRLVVDTGLH AKGWSREQAI QYMKDNSPMA ETDIVAEVER
YMAIPGQALS YKVGQLTILK LRAEAEAKLG EKFDIKAFHD QILTSGSLPM AVMEQKVGRW
VKAELAK
|
|---|
| |