| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2381 |
|---|
| Symbol | |
|---|
| ID | 4018879 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 2833696 |
|---|
| End bp | 2836461 |
|---|
| Gene Length | 2766 bp |
|---|
| Protein Length | 921 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637956408 |
|---|
| Product | DNA polymerase III, subunits gamma and tau |
|---|
| Protein accession | YP_563384 |
|---|
| Protein GI | 91793733 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2812] DNA polymerase III, gamma/tau subunits |
|---|
| TIGRFAM ID | [TIGR00678] DNA polymerase III, delta' subunit
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02397] DNA polymerase III, subunit gamma and tau |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000191992 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTATC AGGTGTTAGC TCGAAAATGG CGCCCAGCCA AGTTCGAACA GATGGTGGGA
CAGTCCCATG TATTATTGGC ATTAACTAAT GCCCTAAGTC AGCAAAGGTT GCATCATGCG
TATTTGTTTA CTGGGACCCG AGGGGTGGGA AAAACCAGTT TAGCCCGGCT GTTTGCCAAG
GGACTAAACT GCGAGACTGG CGTCACTGCG AGCCCTTGTG GAACCTGTTC CAGTTGTGTT
GAAATTGCTC AAGGTCGATT TGTCGATCTG ATTGAAGTGG ACGCCGCCTC CCGCACTAAA
GTCGATGACA CCCGAGAACT GCTGGACAAT GTGCAATACA AGCCTGCCAG AGGGCGCTTT
AAGGTCTACC TTATTGATGA AGTGCACATG TTATCTCGTA GCAGTTTTAA CGCCCTGCTT
AAAACCTTAG AAGAGCCACC AGAGCACGTT AAATTTTTGC TGGCGACAAC GGATCCACAG
AAATTGCCTG TGACTGTGTT GTCTCGGTGT TTGCAATTTA ATCTTAAAAG CTTATCTCAG
GATGAAATCT CTCAGCAGCT GGAGTTTATT CTTGGCCAAG AGCAACTTCC TTTCGAATCC
CAAGCGCTGA CATTATTGGC AAAAGCGGCC AATGGCAGTA TGCGTGATGC CTTGAGTTTA
ACCGATCAAG CCATCGCATT TGGAAGCGGT CAAGTGATGC TTACTCAAGT GCAGACCATG
CTCGGCAGCA TAGATGAGCG TCAAGTGATA GGTTTACTTA AGAGCTTATG TGATGCCGAT
ATCGCCCATT TGATGCAAAC CACGGCGCAA GTCTTGTCTT TTGGCGCCGA TGCCGATGAA
GTGCTGCGCA GCCTGCTTGA ATTATTGCAC CAGATAACCT TAAGCCAATT CGCCCCAGCC
GCGGCGCAGC ATTCACTCTA TAGTGAACAA ATTTTAGCAT TCGCAAAGCA GCTTAAGCCT
GAGCAAGTGC AGTTGTATTA CCAAATTTTA TTGACTGGCA GAAAGGAGCT GGCGTTTGCG
CCTGATCCAA AATCCGGTCT TGAAATGGCG CTGCTTAGGG CGGTTGCCTT CGTGCCAGAA
AAAACCGTTA ACCGTTGGGT TGTGGACGAT ACAGCCACAC TCGAACTCCC CAATGGCACA
AGTAAGGCGG CAGCCAAAAC AAAACCTGAG CCAGACGTGA AGTTGAGCGC TGAAACGACT
GAGGTGACTG AAGCGACTGA AACCCTTGCT GTTTTAGGCA CGCCTGTAGC ACAGACAATA
ACGGCAGAGG TGGCATCCCT TGAAGTAAAG GATACACCCA GTGACACTGA GCAAGTCATC
GAAGATGATG AAGGTGCACC ATTAAAGGCA CTAACAGCCG AACAAGACGT GCTACTCAGC
CAAGCTGCTA GCATGGGATT TGAGCCGCAA AACAGCAATG ATGACAGTCC ATCATCAGAT
GTTGTCGTTA ATGATACTTC ATCAGCTCAA GCTAACGATG ATGCCAGTGT GACTGATGAG
TACGCAGATT ACATGCACTA TGGCTTTGAT GAGCAAGTGT CAGAGGCGCA CCCTGACGCC
TATCTACAAG AGCCGACCTT AGATAGCCAT TCAGCAGAAG AAAGCCTGTT AGTCGCAGAG
GGTGTATCTG TCGATGGAGC GGCATTATCT AGCTCAGCCG TTTTAAATCC AGAGGTAAGC
CAAGAGGCGT TGACACTTGC AGTGTCAGAT GAAGCATTAG CCCCTGTGGT TGATGACATT
TTAGATGCCG TGCTTGCCAG TCGTGATGCG TTAATCGCAG ATGTGAGTGC GATTAATCTT
GCCAATAATG CTGAGCCAAA TGCTGGCAGC ATTAAGGTAG GTGTTGCAAA AAAGCCACTG
GGGGCTCCTC AAGCTAGCAC CCAGGTAGAA AGTGTAAGGC CGCAGGCTGA AACTGAAGCT
CAGAATCATG CACCACAAGC ATTAGTGACT CAGGAAGCGC CTCTGTTAGA CAAAGTGTCC
ACAGATGCTG ATAGGCCGCC ATGGGTGGCA GCAAGTGATG GGTCATCACA GTTTGACCCA
CTAAAACTTG CCCAAGATAC GCCATTGTCC CATGCTCAAG ATAATAGGGT GAGCAGTGTA
GGGATGGAAG ACAAGACCAC ATTGGACTCA ATACTTCCAG TCATTGAAGC ACTGCCGGCT
ATCGAAGCAG AAGCGCAAGG GACAGGGTAT GCTGAGAAAA TGCTTGATAC AGCCATGCCT
GCTAAATTAA TGTCCGATGT AGCAGATGAT GATTCTGGCA TTGACGCTCA GCTGATTTCA
GAGCATCAGA TAAGCGGTCA TGAGATGGAT TTGCATTGGT ATAAAATGAT GGCAGAAGTT
AAAATTGGCG GGCGAATAAG ACAGCTTGCC GTTAACTCTG TCTGCCAAGG CTTAGCGTCA
CCTTTCCCTT TATTGCTAAA GCCAGATCAA AAACATTTAG GCGCGGATGT GGCGGTAAAA
CAGCTGGAAG CGGCGCTGAG TGAATACTTG CAACAAGATG TCAGTATTGC CGTCAATGTG
GGATATGATG AACACAGAGA AACGCCGCTG GAATTGCGAA AGCGATTTCA TCAAGAGTTA
TTGCAACAAG CAAAACAGCG TTTAATCGGC AGTAACAAGG TACAATGGCT ACTTAGCCAA
TTGGACGCCC AGCTTCAAGA AGACAGCTTA GTCTACCCAG CTGAGCAGTT ACAGCAAGTT
GGACAGCGGA TCACATTTCA GCAGCAAGAC GCAGACAGTG TGCAAAAATT TGCCTCAATT
GCCTGA
|
|---|
| Protein sequence | MSYQVLARKW RPAKFEQMVG QSHVLLALTN ALSQQRLHHA YLFTGTRGVG KTSLARLFAK
GLNCETGVTA SPCGTCSSCV EIAQGRFVDL IEVDAASRTK VDDTRELLDN VQYKPARGRF
KVYLIDEVHM LSRSSFNALL KTLEEPPEHV KFLLATTDPQ KLPVTVLSRC LQFNLKSLSQ
DEISQQLEFI LGQEQLPFES QALTLLAKAA NGSMRDALSL TDQAIAFGSG QVMLTQVQTM
LGSIDERQVI GLLKSLCDAD IAHLMQTTAQ VLSFGADADE VLRSLLELLH QITLSQFAPA
AAQHSLYSEQ ILAFAKQLKP EQVQLYYQIL LTGRKELAFA PDPKSGLEMA LLRAVAFVPE
KTVNRWVVDD TATLELPNGT SKAAAKTKPE PDVKLSAETT EVTEATETLA VLGTPVAQTI
TAEVASLEVK DTPSDTEQVI EDDEGAPLKA LTAEQDVLLS QAASMGFEPQ NSNDDSPSSD
VVVNDTSSAQ ANDDASVTDE YADYMHYGFD EQVSEAHPDA YLQEPTLDSH SAEESLLVAE
GVSVDGAALS SSAVLNPEVS QEALTLAVSD EALAPVVDDI LDAVLASRDA LIADVSAINL
ANNAEPNAGS IKVGVAKKPL GAPQASTQVE SVRPQAETEA QNHAPQALVT QEAPLLDKVS
TDADRPPWVA ASDGSSQFDP LKLAQDTPLS HAQDNRVSSV GMEDKTTLDS ILPVIEALPA
IEAEAQGTGY AEKMLDTAMP AKLMSDVADD DSGIDAQLIS EHQISGHEMD LHWYKMMAEV
KIGGRIRQLA VNSVCQGLAS PFPLLLKPDQ KHLGADVAVK QLEAALSEYL QQDVSIAVNV
GYDEHRETPL ELRKRFHQEL LQQAKQRLIG SNKVQWLLSQ LDAQLQEDSL VYPAEQLQQV
GQRITFQQQD ADSVQKFASI A
|
|---|
| |