| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2358 |
|---|
| Symbol | |
|---|
| ID | 4018852 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 2805202 |
|---|
| End bp | 2807769 |
|---|
| Gene Length | 2568 bp |
|---|
| Protein Length | 855 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637956381 |
|---|
| Product | peptidase M1, membrane alanine aminopeptidase |
|---|
| Protein accession | YP_563361 |
|---|
| Protein GI | 91793710 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0308] Aminopeptidase N |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.249972 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTAA TAAATTTGAA TTTTAATATA ACTAAGTCAC TAACAATCAG GCTTGTTGGT
ATCATCCGTA TTGCCACTTT ATTTTTCTCA CTTTCGTGCT TGTCTATTGA TGCACAAGAG
TATCGATTAC CGCCAGATAT AACGTTGCTG GAGCAATCTG TAGCGTTAAC GCTTGACCCT
AATAAAGTCA TATTCAGTGG GGAAACAAAT TTATCGTTAA ACATTAAATC ACCGACTAAT
GTTGTCTCAT ACCACAGCCA CAATCTTGTT ATTGAATCGG TTGTACTAAC GGTCAATGGT
AAGCCCTCGT CACTCCAAAT TGCTAATCCC GATGAATACG ATATTGTGCG TCACATACTT
GCCGATGAAA TATCAGGTAA AGTAAGTCTT AAAATTACTT ATCAAGGCCA ATTTTCAGAG
CATTCAACAG GTTTGTTTGT TCAACGAAAA AATGTTGAAT CAGCCTATAT CCATTCACAA
TTTCAGCCGA TGGAAGCCCG AACAGTTTTT CCTAGCTTTG ATGATCCGAG TAAAAAGGCC
GAATTCCAGT TCACACTTAC TATTCCAGCG CATCTTGATG CGCTGCATAA CACTCACCCT
GAATCAAGCA AGGTTGATGG CGACAAAAAA GTGATTCAAT TTACTAAAAC AGAAAAAATG
TATTCAGATG TATTAGCGCT GGCGGTGGGA GAGTTTGACG AGAATGTTCT GCAAAAAACT
GCGCTAAATT CGACAATTTA TGCACCCAAA GGTCTGGTTT ATTCGATTAA TGATGACATG
TCTGCGCTGA TAAATAATAG TGTGAACTAC ATTTCTGATT ATCTTAAATA CCCTTTGTCT
TATGACAAGT TAGATTTTTT CATTTCACCG TCTGGTGGCG CAGCTATGGA AAATGTCGGC
CTTATCACGC TCAACCCCAG CGAATTGCCA CCCAACAATC CTAGTAGTTC TGATTTGTGT
GAGTTTCGAA AATTAATCGC CCATGAAATT GCGCACATGT GGTTTGGTAA CGATATTACG
ATGCAATGGT ATAACGAGTA TTGGATGAAT GAGTCGTTCA GCGAAATGTT TGCTGCCAAA
GTGGTTCAGG CTCACTATCC CGAAACAGCA CAATGCACAT ACACACCTCA ATCTGAGGCG
TTTGCTGATG ACAATAATAA TCAAACTACT CTGCGCTATT TTGTTAAGCA TAAAGGCGAA
AATGAGTCTA TAGGTCAGTT GGTTTACACC AAGGGGTTTT CTGTTCTACA AATGCTTGAG
CAGGCTACAG GTGAGCCAGA ATTCAAAAAA CGAATTCGGC TATATGCGCA AGACCTAAAG
GGCGGCAACA CATCACTTGA ACAATTTACT CATTACTTTA GCGAATTCGT CTATGTTTCA
AACATGTTCG ATTCATTCTT GAATCAATCA GCTTACCCAC TCATTACAAT TTACAAAAAA
GAAAATGCGC TTTACCTAAA GCAAGAAAAC TACTTTGATG ACGTTAAGCG CTGGACAGTA
CCACTGTCAT TAAAAATATG GGATGGAAAA TCAGTATCCA ATCAGACTGT TATTTTAAAT
AGTGAAGAAA TGCGTCTTGA TGGAGTTACA GGAGATGCGA GTGTCTTCAT AGGTGCTAAC
GGCGTGGGGT ATTTCAGGCA CATAGACGAA TCAGGCAATA ACCCTTTTCC GATAAACGTA
CTCAATGATG CAGAGCGCTT ATCCTTCATG GAAAACAACG AAGGTTTAGC TAAGTCTGGG
CGCATTGACT ATATGAAATA CGTTGATACG TTAATACATA CCTTGAATAC ATTGCCCAGA
GACAGCATCG AATCTGAACA AGCTTTATAC AGTCTTATCT ATTCGTTTGT CGAATTTGTT
CCCGAAGATT TACGCTTAGA TTACGCTAAT TTCCTAACGA GCCAACTACC AAAGGATATT
CAATGGAATG ATATTTTAGA CCAGGATAAC GGAGGGTTTT GGATAGAATT TTATGGAGTC
TATTTAGATA ATGAGGCTGT TATTACTCTG GCTAAAAAGC AATTAAATGA AAACAAGCTT
CAAGACGCAA AGCATCGCCT AGAAATTCTA AGAGTGCTTG CAGCCAATGC AACCGATAGC
GAGTATAAAG CATTATTAGA TTTATTTTTC AAAGGGGACA CTTCTTATAA AGAAAGCGTT
CTAGATGCGT TAGGTTATAC AAATAAAAAG CATCAAGTGG AACAGTTTTA TGAATTCTTG
TTGAGTGATG CGACTAAAGA ATTGACTATT GACTATCGCT TTCAGTACCC ATCTTTTCAA
CCAGCGCTAA GCGATTTTGT CGCACAGTAT TTCGTAAAAA ATAAAGACAG AATACTAAAG
CGAATTCCCG AAGCTGATGC CCAGTGGTTT GTATATAACG TTATAACAGC TTGCTCTGAG
AAGGAAGCTA CGTCGGTTAA AACGACATTT TCTGGTTGGA AAAACATAGA CGGTTTAACT
GAGAAATTAA CGACAGTTTT AAGTAATATA AATGAGTGCG CGGCAGAGGC TAAAAATAAG
CTGGCGAGCA TTCATGAGCG AATATCCACA ATTAACACTA AGCAGTAA
|
|---|
| Protein sequence | MELINLNFNI TKSLTIRLVG IIRIATLFFS LSCLSIDAQE YRLPPDITLL EQSVALTLDP
NKVIFSGETN LSLNIKSPTN VVSYHSHNLV IESVVLTVNG KPSSLQIANP DEYDIVRHIL
ADEISGKVSL KITYQGQFSE HSTGLFVQRK NVESAYIHSQ FQPMEARTVF PSFDDPSKKA
EFQFTLTIPA HLDALHNTHP ESSKVDGDKK VIQFTKTEKM YSDVLALAVG EFDENVLQKT
ALNSTIYAPK GLVYSINDDM SALINNSVNY ISDYLKYPLS YDKLDFFISP SGGAAMENVG
LITLNPSELP PNNPSSSDLC EFRKLIAHEI AHMWFGNDIT MQWYNEYWMN ESFSEMFAAK
VVQAHYPETA QCTYTPQSEA FADDNNNQTT LRYFVKHKGE NESIGQLVYT KGFSVLQMLE
QATGEPEFKK RIRLYAQDLK GGNTSLEQFT HYFSEFVYVS NMFDSFLNQS AYPLITIYKK
ENALYLKQEN YFDDVKRWTV PLSLKIWDGK SVSNQTVILN SEEMRLDGVT GDASVFIGAN
GVGYFRHIDE SGNNPFPINV LNDAERLSFM ENNEGLAKSG RIDYMKYVDT LIHTLNTLPR
DSIESEQALY SLIYSFVEFV PEDLRLDYAN FLTSQLPKDI QWNDILDQDN GGFWIEFYGV
YLDNEAVITL AKKQLNENKL QDAKHRLEIL RVLAANATDS EYKALLDLFF KGDTSYKESV
LDALGYTNKK HQVEQFYEFL LSDATKELTI DYRFQYPSFQ PALSDFVAQY FVKNKDRILK
RIPEADAQWF VYNVITACSE KEATSVKTTF SGWKNIDGLT EKLTTVLSNI NECAAEAKNK
LASIHERIST INTKQ
|
|---|
| |