Gene Sden_2338 details

Gene Information

• Locus tag: Sden_2338
• ID: 4018832
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: -
• Start bp: 2768302
• End bp: 2770140
• Gene Length: 1839 bp
• Protein Length: 612 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 637956361
• Product: sigma-54 factor, interaction region
• Protein accession: YP_563341
• Protein GI: 91793690
• COG category: [K] Transcription; [Q] Secondary metabolites biosynthesis, transport and catabolism
• COG ID: [COG3284] Transcriptional activator of acetoin/glycerol metabolism

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.00232257
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAGCTA AAACACCGTC TTTGCTGCAA GGAAGTTCTC ATTGGCTAAC CGATTCTTGG 
CAAAGAAGCA GCTTGGCTGG CTTAGAGCAG ACTCATCTCC CTGAATATCA CAAGCTCGAC 
CCTGTGAGTC TGCAGCAAAA ACAAGCCGAT CACTCTGTGC TTATTCGCTT AGTGGAAACC 
CAAGCCTTGC CGCTGTTTTA TCAAGTCATG GCCCACAGCC AAAGCCGCCT TATTCTGTCA 
GCTAGTGATG GTTATGTGCT TAAGCATTGG GGGCTGTCGA AATACTCAGA CAAGCTTGCG 
AATATCGCCT TAGATGAAGG AGTGAGTTGG TTAGAAGAAA ACCAAGGCAC CAATGCCATA 
GGCACAGCGC TTAAGGCGAG GCAGTTGGTG TCTGTGATTG GCGAACAGCA CTTTTTTGCC 
AAGCACAGAT TCATGAGCTG TACGGCTAGC CCGATATTTT CTCCCTCCGG CGAATTAATT 
GCGGCGCTAG ATATTACCAG CGAACAACAA GTGCACAGTC AGCAAACCTT ATTGTTGATT 
TCAAGTTTGG CCCAACTCAT AGAAACCGCC TTATTATGCC AGCTCCCTGA TAGCCATTAT 
CGGGTAGACT TAGCCACCCA GCCGCATTTG TTTGGCTCCT TGTGGCAAGG GATAGCAGTG 
GCTGACAGTC AAGGTAAATT ATTGGGTTTT AACCCCATGG CGAAGCATTT ATTGCAGAGC 
ATGCAAGTGG GGGACTCTCT GACTCAGCAC ATTGGCGATC GTTGGCAGCG AGAGCGGCAT 
TCACAGCACA AGATGCTGCA CCTTAAAACT CAGCAAGTAG AAAAACAGCC ACTCAAAAAG 
TCAGCCCCTT CGCAGACAGC AAATAAACTC GGGCTTAAAT TTAAAGACCC TCAATTAGAA 
CAAGCCTGGC AACAGGCCAA TAAAGTGTTA ACTCGTCAAA TCCCATTACT TATTTGCGGC 
GAAACTGGAG TGGGCAAAGA GCATTTTGTT AAACAACTTC ACAGTCAGAG TGACCGTCAC 
GCTAAGCCCT TAGTTGCGAT AAACTGCGCG GCGATTCCTC ACGACTTAGT GGAGGCTGAA 
TTGTTTGGCT ATCAAGCTGG CGCTTACACC GGCGCCAACA AGCAAGGGTT TATGGGGAAA 
ATTCGACAAG CCCATGAAGG TTTCTTATTT CTCGATGAGA TTGGTGATAT GCCATTGATG 
GTACAAACTC GGTTACTGCG GGTTTTGCAG GAACGTGAAG TGGTGCCCAT TGGTTCCAAC 
AAGGCTATCC CTGTGGATAT TCAATTGGTG GCCGCAAGTC ATGGCGATCT ATTGTCAAAA 
GTGGCAAGTG GTGAATTTAG ACAAGACTTG TTTTATCGCT TAAATGGCTT ACAGATAAGA 
TTACCCGCCC TAAGAGACAG GCAAGATAAG CTGAGGATCA TTGAGAAGCT TCATGGTAAA 
TACCGTCTGG GTGAGCAAGG CATGTGTCCG CAACTGCTTG GGCTTTTGTT AGCTTATTCT 
TGGCCTGGTA ACCTCAGGGA GCTGGATAAT ATGATGCAAG TGGCGTGTTT GATGGCAGAA 
GGTGAGCGAC AACTCACGTT TGATAAATTA CCTTCGCAGA TCCAAGTTCA GTTGCAGACG 
TGTGCCACTG CGGTGAAACA GCATGGATTT TCGCCTGTTA TAGAAACAAG TCATACCGAG 
CTTAAGCCCA AGTGCCGCCA GAATTTAGCT CAGCAGGTAG AGGCAGAAAT CATGGCGGCA 
TTTCTAGACG CAGACTCCAA TGTCAGTCAG TGCGCTAAAA ATTTGGGCAT TAGCCGCAAC 
AGCTTGTATC GTAAACTGAG AAAGCTTGGG GTGAGATGA 

 

Protein sequence

MTAKTPSLLQ GSSHWLTDSW QRSSLAGLEQ THLPEYHKLD PVSLQQKQAD HSVLIRLVET 
QALPLFYQVM AHSQSRLILS ASDGYVLKHW GLSKYSDKLA NIALDEGVSW LEENQGTNAI 
GTALKARQLV SVIGEQHFFA KHRFMSCTAS PIFSPSGELI AALDITSEQQ VHSQQTLLLI 
SSLAQLIETA LLCQLPDSHY RVDLATQPHL FGSLWQGIAV ADSQGKLLGF NPMAKHLLQS 
MQVGDSLTQH IGDRWQRERH SQHKMLHLKT QQVEKQPLKK SAPSQTANKL GLKFKDPQLE 
QAWQQANKVL TRQIPLLICG ETGVGKEHFV KQLHSQSDRH AKPLVAINCA AIPHDLVEAE 
LFGYQAGAYT GANKQGFMGK IRQAHEGFLF LDEIGDMPLM VQTRLLRVLQ EREVVPIGSN 
KAIPVDIQLV AASHGDLLSK VASGEFRQDL FYRLNGLQIR LPALRDRQDK LRIIEKLHGK 
YRLGEQGMCP QLLGLLLAYS WPGNLRELDN MMQVACLMAE GERQLTFDKL PSQIQVQLQT 
CATAVKQHGF SPVIETSHTE LKPKCRQNLA QQVEAEIMAA FLDADSNVSQ CAKNLGISRN 
SLYRKLRKLG VR