Gene Sden_2239 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_2239 
Symbol 
ID4018731 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp2658235 
End bp2660181 
Gene Length1947 bp 
Protein Length648 aa 
Translation table11 
GC content43% 
IMG OID637956261 
Productchemotaxis sensory transducer 
Protein accessionYP_563242 
Protein GI91793591 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGTTGA ATTTTCAAAA TTTTAAAATC CGCCATTTAT TAATTTTAAT TATTAGCTTT 
GCGTTAATCT TTTTAGCGGC ATCCACTACG CTTCTCAATC GGTCGCTATT TTTTGCTTCT
GCAGAGAAAA GCATTGAAGA GGAACTTCTG CCTAATCAGC TTGCAAAAAT TGAAGCGCAA
ATCCGCTATC AGCTCAGTAC ACCCATTGAA CTTTCAAAAG CCATGAGCCA AAACACTTTC
ATCTTAGATT GGGTTATGGC ACAGGAACCC GCGGCTCAAC AACAGCAAGT GATTGATTAT
TTAGCTCATG TGCAGAAAGA AAATAAAGCC GGTGTGGTTT ATTGGGTATC AAACGTCAGT
AACCAATATT TGACCAATAA CGGCGTATAC AAAACCATGA GCCAAAGTGA CGAGAAAGAC
GCTTGGTTTT ACCGTTTTTT AAGCGGCAAT AAAACCTTTG AGATCTCCTT CGATTTTGCC
GCTAATGGTG TCGATTTGAC GGCTTATGTT AACTACAGAG TGAAATACAA TGGCAGAGAC
TTAGGGGTTG TCGGCATTGG TTATAGCGTC AATGAGTTAA GCAAAAACAT TCTCAATAAT
AAGGTGGGCG AAACCGGTTA TGTGTTTATT ACTAATGATG CCGGCGACAT CATTATTCAT
CCTACATTGA ATCAATTAGA GAGCAAAAAA CTTCGTCAAA ACAAAGGCTT TACCGACATT
GCCGATAGCT TGTTAAAGCC TGATGCCAGT TATAGCTTTA ATGAAACCAA GCTAAAGGGG
GAGAATGTCT ATGTGGCGAG TGTGGGGATC CCTGAGCTTA ACTGGAAGAT TTTGGGGGTG
CTGCCTAGCG AAGAGCCCAT GGCCAGTATT CGTTCCACCT TGCTTAAAAG CAGCGCCTTA
AACTTAGTGA TAGTGATTTT CTTTATTTTA GTCATGGTCA ATCTTGCCAG CCGTATTACC
TTGCCCATCA CAGAAATTGG TGAGCGCTTG ATGACAATGG CAAAAGCGGG CGGCGATTTA
ACCCATCAGC TTAATCAAGA CAGGCGTGAT GAACTGGGCA CCTTAGCCCA AGGATTTAAT
GCCATCATCA GCAAGGTGCG CTCCATCATG GTGGACATCA AGACATTAGA AGATCAGATG
ACCCACTCGT TCAATGATAT GCGCCATATG TCCTCAGAAA TTAATAACTG CGTCAGCGCT
CAGCAGCAGG AGTCAGATTC TGTGGCAGCG GCGGCTACAC AAATGACCCA CAGCATACAG
TCAGTGAGTG ATTTAGCCAA TGAATCGGCC GCAAACACTG AGATGACTCA GCAGAAGATA
ATCCAAGTCA ATCAAGGGGT GCTTGAGTGT AATCAATTGA TGCAATCCTT ACATGTGAGT
AATGAAAGCA CTCAAGAAAA AATCTCTCAG CTGGCGGCGC AAACCTTGAC CATTAGTTCA
GTGGTGGATG TGATCAGCAG TATTTCTGAA CAAACCAATT TGCTGGCATT AAATGCCGCC
ATTGAAGCGG CTCGGGCCGG TGAACAAGGC CGTGGTTTTG CCGTGGTTGC CGATGAAGTG
CGTACCTTGG CGGCACGGAC GCAAAAGTCC ACTCAAGAGA TTAAGTCTGT TATCGATAAT
TTGCAGGCTC AATCGAAAGA AACTGTGTCT GCCATGCATA AAAATACTGA GCTTGCCTCT
GCAGGGCTTG AAAAAACCAG CGTAGCCAGT GAAGCGTTAA AGCAAGTGGT GTTGGACATA
GGCAATATTA CTAATCAAAA CACCCAAGTG GCAGTGGCAA CACAGGAGCA ATCCAATGTG
ATTGGTGAGC TTAATTCCAA TATCAATCGC ATTGCTGATA TGTCGCGTAT GATTGCCGAT
TTCTCCACTC AAACCCAAAG CTCAGTACAG CAATTAGATA CTCAAAAACG CAATCTCACT
CAATTGGTTG GGCAATTTAA AACGTAA
 
Protein sequence
MTLNFQNFKI RHLLILIISF ALIFLAASTT LLNRSLFFAS AEKSIEEELL PNQLAKIEAQ 
IRYQLSTPIE LSKAMSQNTF ILDWVMAQEP AAQQQQVIDY LAHVQKENKA GVVYWVSNVS
NQYLTNNGVY KTMSQSDEKD AWFYRFLSGN KTFEISFDFA ANGVDLTAYV NYRVKYNGRD
LGVVGIGYSV NELSKNILNN KVGETGYVFI TNDAGDIIIH PTLNQLESKK LRQNKGFTDI
ADSLLKPDAS YSFNETKLKG ENVYVASVGI PELNWKILGV LPSEEPMASI RSTLLKSSAL
NLVIVIFFIL VMVNLASRIT LPITEIGERL MTMAKAGGDL THQLNQDRRD ELGTLAQGFN
AIISKVRSIM VDIKTLEDQM THSFNDMRHM SSEINNCVSA QQQESDSVAA AATQMTHSIQ
SVSDLANESA ANTEMTQQKI IQVNQGVLEC NQLMQSLHVS NESTQEKISQ LAAQTLTISS
VVDVISSISE QTNLLALNAA IEAARAGEQG RGFAVVADEV RTLAARTQKS TQEIKSVIDN
LQAQSKETVS AMHKNTELAS AGLEKTSVAS EALKQVVLDI GNITNQNTQV AVATQEQSNV
IGELNSNINR IADMSRMIAD FSTQTQSSVQ QLDTQKRNLT QLVGQFKT