Gene Sden_2031 details

Gene Information

• Locus tag: Sden_2031
• ID: 4018523
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: +
• Start bp: 2410787
• End bp: 2412712
• Gene Length: 1926 bp
• Protein Length: 641 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 637956056
• Product: alpha amylase, catalytic region
• Protein accession: YP_563037
• Protein GI: 91793386
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0366] Glycosidases

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAAAT TGACCTTCAC TGTGGCTACC ACCCTGCTTA TGAGTGCGAT GAATTTAGCT 
ATTGCAGCGC AAAGCCCCTC CTCCTTTACC ATCAATGCTG AGCCTATGTT TTGGTGGGCG 
GGAATGGAAA ATAGTCAACT AGAGCTCTTG ATAGAAGGCG ACAATGTTGC GGCCTTGACC 
CCTAAGCTTA GCCAACAGCA AGGCATTACA TTAGTCAAGA CTGAGCGCAG CACTAGCCCA 
AACCATTTGT TTGTTACTCT GGATCTGCAT CAAGCCCAGC CGCAAACATT AACCATTGAT 
TTTTATGAAT TAAACAATCC TAAAAAACCC GCTACAGCGA CATTAGCCTA TCAACTAAAA 
CCAAGAACAT CAGACTCAAA GCAGCGCCAA GGCTTTAGCA ATAAAGACGT GATATACCTT 
ATTACCCCAG ACAGATTCGC CAATGGCAAC CCAGATAACG ATAACCATAC CACCATGTTG 
GAAAAGGTGA ACCGCAGCGA TAAAGATGGC CGTCATGGCG GCGACATCCA GGGCATAATC 
GAGGCGCTGC CTTATTTAGC CGACTTAGGT GTGACTCAGC TATGGATAAA CCCACTACTG 
GAAAATAACC AAGAAAAGTA TTCTTACCAT GGTTATTCCA TCACAAACTT TTATCGAATA 
GACCCCCGCT TTGGCAGCAA TCAGGACTAT GTCAATCTAG TTCAACAGGC GAATAAATTG 
GGGATTGGGG TAATTAAAGA CATAGTTGTC AATCATATGG GCAGCGGTCA TCCTTGGATG 
ACAAATTTCC CCAGCGCCAC CTGGGTCAAC GGCCAAGCAA GTTTGCAGCA ACAACTGCCA 
TTGGATTTTA CCAACCATAG ACGCACCACA GTGCAAGACC CCTATGCCGC GAGCACCGAC 
ACCCAAGCCT TCAGCGACGG CTGGTTTACC GATACCATGC CTGACATGAA CCAGACCGAC 
CCTCACTTTG CCACCTATCT CATTCAGAAC AGCATCTGGT GGGTGGAGTA CGCAGGTTTG 
AGCGGCATTC GAGAAGACAC TTACTCTTAT GCTGATAAAG CTTTCTTAAC TCAGTGGTCT 
AAGGCCATCA TGACCGAATA CCCCAAGTTC AATATTGTCG GTGAAGAGTG GAGTCCTAAC 
CCCATCACCG TCAGCTATTG GCAGGCGGGC AAGCATAATA AAGATGGCTA TGTCTCCCAT 
GTACCTAGCA TGATGGACTT CCCCTTGTAT GAGAAACTTA TCGCCTCGCT CACCCAAGTC 
GAAGGCTGGG ACACGGGCCT AGTCAACCTC TATGAGATGC TCGCCAACGA TGTGGTTTAT 
GCCGAACCGA CCCAATTGGT GCTGTTTGAA GGCAATCACG ACACCAATCG CCTCTATAGC 
TTGATGAATG AAGATCTTGC CCTGTTTAAG ATGGCCATGG CTTATGTGCT CACGAGTAAT 
CGCATTCCAC AGATTTTTTA TGGCACAGAA GTGTTGATGA CAAGCCCCAC TAAAGACAGA 
AACGATGGCC TAGTTCGCAG TGATTTTCCC GGTGGTTGGC AAGGCGATAG CCAAAATGCC 
ATCACAGGCG ATAACCTCAG TCCAGCTCAA ATCGAAGCTC AACATTTTAT CAAGACCTTG 
CTCAATTACC GTAAGCACTC AGACGCTATC ATAAACGGCA CCCTTAGCCA TTACGCCCCT 
CAAGACGGTG TGTATGTGCA ATTCAGACAA GCTGGGGATG AAACCTTGAT GAGTATCTAC 
AACAAAAATT CGGCCCCAGT GAATTTAGCC TTAGGCCGTT TTGCCGAGCA TATAGGCAAG 
CACACTCAAG CCAGCAACAT CCTTGAACAC ACAGAGTTTG ACTTAAATGA CAGCATATCG 
CTCACAAAAA AAGGCGTGAC TCTGCTCAAA TTAAGTACGC TCAAATTAAG TACCCACAAG 
CCCTAG 

 

Protein sequence

MKKLTFTVAT TLLMSAMNLA IAAQSPSSFT INAEPMFWWA GMENSQLELL IEGDNVAALT 
PKLSQQQGIT LVKTERSTSP NHLFVTLDLH QAQPQTLTID FYELNNPKKP ATATLAYQLK 
PRTSDSKQRQ GFSNKDVIYL ITPDRFANGN PDNDNHTTML EKVNRSDKDG RHGGDIQGII 
EALPYLADLG VTQLWINPLL ENNQEKYSYH GYSITNFYRI DPRFGSNQDY VNLVQQANKL 
GIGVIKDIVV NHMGSGHPWM TNFPSATWVN GQASLQQQLP LDFTNHRRTT VQDPYAASTD 
TQAFSDGWFT DTMPDMNQTD PHFATYLIQN SIWWVEYAGL SGIREDTYSY ADKAFLTQWS 
KAIMTEYPKF NIVGEEWSPN PITVSYWQAG KHNKDGYVSH VPSMMDFPLY EKLIASLTQV 
EGWDTGLVNL YEMLANDVVY AEPTQLVLFE GNHDTNRLYS LMNEDLALFK MAMAYVLTSN 
RIPQIFYGTE VLMTSPTKDR NDGLVRSDFP GGWQGDSQNA ITGDNLSPAQ IEAQHFIKTL 
LNYRKHSDAI INGTLSHYAP QDGVYVQFRQ AGDETLMSIY NKNSAPVNLA LGRFAEHIGK 
HTQASNILEH TEFDLNDSIS LTKKGVTLLK LSTLKLSTHK P