Gene Sden_1968 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_1968 
Symbol 
ID4018457 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand+ 
Start bp2333341 
End bp2333979 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content44% 
IMG OID637955990 
Productcytochrome c oxidase, subunit III 
Protein accessionYP_562974 
Protein GI91793323 
COG category[C] Energy production and conversion 
COG ID[COG1845] Heme/copper-type cytochrome/quinol oxidase, subunit 3 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones43 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTGCTA TGAATAATAA ATCCACCTCT TTACCACAAG CATTACCGAA TGTAATACCC 
AATGTATTAG TGCAGCAAAA ATATAAAAAC CAGATCCCAG GGGATATGGC CATGTGGCTA 
CTGATCGCCA TGGAATTAAC CGTATTCGCG CTATTTTTTA TCGGTTTTGC TGTGATGAAA 
CGTATAGAGC CGCAGATGTT TGCTAAGGGG CAGAGCCTTA TTCATCTCTC TATCGGCTTG 
CTATGCACCT TAAGCTTACT CATGAGCAGC TACCTTCTGG CACTGGCGCT GGTTAATGCC 
AAACAAGGAC ACAATATCCG TGTCAGTCAT TTACTCCGCG GGGCCTTGTT GTTCGCCTTT 
ATCTATCTGG TGGCCAAAAT ATGGGAGTAC GCCCTACTGA TAAACGCAGG TTTTGACCTA 
TCCACCAATG ACTTTTTCAC CTTGTACTTT TTGATCACAG GATTTCATTT TATGCACGTG 
GTGCTTGGCT GCATGATTTT AGTGTATCTT CATCAGCAAA GCCGACAACA GCGTTATGGC 
CCCAATGATT ACAGGGGGTT TGAAGCCGCA GCCGCTTACT GGCACATGGT GGATCTGGTG 
TGGATTTTAG TGTTTTTCTT AATTTATATT GCCCATTAA
 
Protein sequence
MSAMNNKSTS LPQALPNVIP NVLVQQKYKN QIPGDMAMWL LIAMELTVFA LFFIGFAVMK 
RIEPQMFAKG QSLIHLSIGL LCTLSLLMSS YLLALALVNA KQGHNIRVSH LLRGALLFAF 
IYLVAKIWEY ALLINAGFDL STNDFFTLYF LITGFHFMHV VLGCMILVYL HQQSRQQRYG 
PNDYRGFEAA AAYWHMVDLV WILVFFLIYI AH