| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1912 |
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| Symbol | |
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| ID | 4018401 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 2247175 |
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| End bp | 2248737 |
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| Gene Length | 1563 bp |
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| Protein Length | 520 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637955934 |
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| Product | tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit |
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| Protein accession | YP_562918 |
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| Protein GI | 91793267 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
[COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
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| TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.00626493 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAGATT TAACTCATTC TTCTTCGGTT GTGATCAAAC AAGCGGATTT CATCGAAAGC
ATAGAAGATG CCTTGCAATA TATCTCTTAC TATCACCCAA AAGATTTCGT TGATGCAATG
AACTTGGCCT TTGAACGTGA AGAGAGCGCA GCGGCGAAAG ATGCTATCGC ACAAATCTTG
ATAAATTCCC GCATGTCAGC AGAAGGCAAA CGTCCTCTTT GCCAAGACAC AGGTATTGTG
ACCACCTTCG TTAAAGTGGG TATGGCAGTT CAGTGGGATA AAACCGACAT GACCATTCAA
GAAATGGTTG ATGAAGGCGT TCGCCGAGCT TATTTAAACC CAGATAATCC ACTACGAGCG
TCAATCGTTG CCGATCCTGC AGGCACGCGC AAGAACACCC GAGATAACAC ACCGTCTGTG
GTGCATATCG ATATGGTGCC CGGCAATCAT GTGGAAGTGC AAATAGCAGC TAAAGGTGGC
GGCTCTGAAA ACAAGTCTAA GATGGCCATG CTAAACCCAT CCGATGATAT CGCCGCTTGG
GTTGAAAAAA CCTTGCCAAC CATGGGCGCA GGTTGGTGTC CACCTGGCAT GTTAGGCATA
GGTATTGGCG GCACAGCCGA GAAAGCAGCC GTACTTGCAA AAGAGTCATT GATGGAAAGC
ATAGATATCC ATGAGCTTAA GGCTCGCGGC GCTGTGACAA CAGAAGAAAA GCTGCGTTTA
GATATTTTTG AACGGGCTAA CAACTTAGGC ATAGGCGCTC AAGGACTTGG CGGATTGACG
ACAGTACTTG ACGTTAAAAT CAAATCTGTG CCAACTCATG CTGCCTCAAA ACCTGTGGTG
ATGATCCCAA ATTGCGCAGC GACCCGTCAT GTGCATTTTC ATCTAGATGG CACTGGGCCT
GCCGACCTTG CGCCGCCATC CTTGTCAGAT TGGCCTGAAA TCACCCGTGA AGCGGGCGAG
AATACTCACA GAGTTAACCT CGATAACATC ACCCAAGCTG AAATCGAAAC TTGGAAGAGT
GGTGATACCT TACTGCTCAA TGGCAAAATG CTTACCGGCC GTGATGCGGC TCACAAGCGC
ATTCAAAGCT TACTTGAGTC TGGCGAAGGT TTGCCCGAAG GCGTCGATTT TAAAGGCAAG
TTTATCTACT ATGTTGGCCC TGTTGATCCA GTGCGTGACG AAGTGGTTGG CCCAGCAGGT
CCAACAACCG CCACCCGTAT GGATAAATTT ACCGACATGA TGCTGGAAAA AACGGGCTTG
ATGGGCATGA TAGGTAAGTC TGAGCGCGGC CCACAAACTG TTGAATCCAT CAAAAAACAT
AAAGCAGTCT ATTTGATGGC CGTAGGCGGC GCGGCGTACC TAGTGTCTAA AGCCATTAAA
AAATCTCGCG TGGTGGCCTT TGCCGATCTG GGCATGGAAG CTATCTATGA GTTTGATGTA
CAAGACATGC CTGTGACTGT GGCTGTGGAT TCAAATGGCG TAAATGCTCA TGAAACCGGC
CCTGCGGTAT GGAAAGTGAA TATCGCTAAC AGTAAAACAG TAAAGCTAAT AGCTAACAGC
TAA
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| Protein sequence | MSDLTHSSSV VIKQADFIES IEDALQYISY YHPKDFVDAM NLAFEREESA AAKDAIAQIL
INSRMSAEGK RPLCQDTGIV TTFVKVGMAV QWDKTDMTIQ EMVDEGVRRA YLNPDNPLRA
SIVADPAGTR KNTRDNTPSV VHIDMVPGNH VEVQIAAKGG GSENKSKMAM LNPSDDIAAW
VEKTLPTMGA GWCPPGMLGI GIGGTAEKAA VLAKESLMES IDIHELKARG AVTTEEKLRL
DIFERANNLG IGAQGLGGLT TVLDVKIKSV PTHAASKPVV MIPNCAATRH VHFHLDGTGP
ADLAPPSLSD WPEITREAGE NTHRVNLDNI TQAEIETWKS GDTLLLNGKM LTGRDAAHKR
IQSLLESGEG LPEGVDFKGK FIYYVGPVDP VRDEVVGPAG PTTATRMDKF TDMMLEKTGL
MGMIGKSERG PQTVESIKKH KAVYLMAVGG AAYLVSKAIK KSRVVAFADL GMEAIYEFDV
QDMPVTVAVD SNGVNAHETG PAVWKVNIAN SKTVKLIANS
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