Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_1912 |
Symbol | |
ID | 4018401 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | - |
Start bp | 2247175 |
End bp | 2248737 |
Gene Length | 1563 bp |
Protein Length | 520 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637955934 |
Product | tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit |
Protein accession | YP_562918 |
Protein GI | 91793267 |
COG category | [C] Energy production and conversion |
COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain [COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region [TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.00626493 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAGATT TAACTCATTC TTCTTCGGTT GTGATCAAAC AAGCGGATTT CATCGAAAGC ATAGAAGATG CCTTGCAATA TATCTCTTAC TATCACCCAA AAGATTTCGT TGATGCAATG AACTTGGCCT TTGAACGTGA AGAGAGCGCA GCGGCGAAAG ATGCTATCGC ACAAATCTTG ATAAATTCCC GCATGTCAGC AGAAGGCAAA CGTCCTCTTT GCCAAGACAC AGGTATTGTG ACCACCTTCG TTAAAGTGGG TATGGCAGTT CAGTGGGATA AAACCGACAT GACCATTCAA GAAATGGTTG ATGAAGGCGT TCGCCGAGCT TATTTAAACC CAGATAATCC ACTACGAGCG TCAATCGTTG CCGATCCTGC AGGCACGCGC AAGAACACCC GAGATAACAC ACCGTCTGTG GTGCATATCG ATATGGTGCC CGGCAATCAT GTGGAAGTGC AAATAGCAGC TAAAGGTGGC GGCTCTGAAA ACAAGTCTAA GATGGCCATG CTAAACCCAT CCGATGATAT CGCCGCTTGG GTTGAAAAAA CCTTGCCAAC CATGGGCGCA GGTTGGTGTC CACCTGGCAT GTTAGGCATA GGTATTGGCG GCACAGCCGA GAAAGCAGCC GTACTTGCAA AAGAGTCATT GATGGAAAGC ATAGATATCC ATGAGCTTAA GGCTCGCGGC GCTGTGACAA CAGAAGAAAA GCTGCGTTTA GATATTTTTG AACGGGCTAA CAACTTAGGC ATAGGCGCTC AAGGACTTGG CGGATTGACG ACAGTACTTG ACGTTAAAAT CAAATCTGTG CCAACTCATG CTGCCTCAAA ACCTGTGGTG ATGATCCCAA ATTGCGCAGC GACCCGTCAT GTGCATTTTC ATCTAGATGG CACTGGGCCT GCCGACCTTG CGCCGCCATC CTTGTCAGAT TGGCCTGAAA TCACCCGTGA AGCGGGCGAG AATACTCACA GAGTTAACCT CGATAACATC ACCCAAGCTG AAATCGAAAC TTGGAAGAGT GGTGATACCT TACTGCTCAA TGGCAAAATG CTTACCGGCC GTGATGCGGC TCACAAGCGC ATTCAAAGCT TACTTGAGTC TGGCGAAGGT TTGCCCGAAG GCGTCGATTT TAAAGGCAAG TTTATCTACT ATGTTGGCCC TGTTGATCCA GTGCGTGACG AAGTGGTTGG CCCAGCAGGT CCAACAACCG CCACCCGTAT GGATAAATTT ACCGACATGA TGCTGGAAAA AACGGGCTTG ATGGGCATGA TAGGTAAGTC TGAGCGCGGC CCACAAACTG TTGAATCCAT CAAAAAACAT AAAGCAGTCT ATTTGATGGC CGTAGGCGGC GCGGCGTACC TAGTGTCTAA AGCCATTAAA AAATCTCGCG TGGTGGCCTT TGCCGATCTG GGCATGGAAG CTATCTATGA GTTTGATGTA CAAGACATGC CTGTGACTGT GGCTGTGGAT TCAAATGGCG TAAATGCTCA TGAAACCGGC CCTGCGGTAT GGAAAGTGAA TATCGCTAAC AGTAAAACAG TAAAGCTAAT AGCTAACAGC TAA
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Protein sequence | MSDLTHSSSV VIKQADFIES IEDALQYISY YHPKDFVDAM NLAFEREESA AAKDAIAQIL INSRMSAEGK RPLCQDTGIV TTFVKVGMAV QWDKTDMTIQ EMVDEGVRRA YLNPDNPLRA SIVADPAGTR KNTRDNTPSV VHIDMVPGNH VEVQIAAKGG GSENKSKMAM LNPSDDIAAW VEKTLPTMGA GWCPPGMLGI GIGGTAEKAA VLAKESLMES IDIHELKARG AVTTEEKLRL DIFERANNLG IGAQGLGGLT TVLDVKIKSV PTHAASKPVV MIPNCAATRH VHFHLDGTGP ADLAPPSLSD WPEITREAGE NTHRVNLDNI TQAEIETWKS GDTLLLNGKM LTGRDAAHKR IQSLLESGEG LPEGVDFKGK FIYYVGPVDP VRDEVVGPAG PTTATRMDKF TDMMLEKTGL MGMIGKSERG PQTVESIKKH KAVYLMAVGG AAYLVSKAIK KSRVVAFADL GMEAIYEFDV QDMPVTVAVD SNGVNAHETG PAVWKVNIAN SKTVKLIANS
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