Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_1901 |
Symbol | |
ID | 4018389 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 2233023 |
End bp | 2234864 |
Gene Length | 1842 bp |
Protein Length | 613 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637955922 |
Product | signal peptide peptidase SppA, 67K type |
Protein accession | YP_562907 |
Protein GI | 91793256 |
COG category | [O] Posttranslational modification, protein turnover, chaperones [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
TIGRFAM ID | [TIGR00705] signal peptide peptidase SppA, 67K type [TIGR00706] signal peptide peptidase SppA, 36K type |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000000029404 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACCGCTA AACCATCGTT TTTTAAAAGA TTCTTTTTAT TTTTGTGGAA TACCATCAAT GGCACTCGCA AACTTATTCT TAACCTTATT TTTTTCTCAC TATTGGCCTT AATCGCCGTT GCCCTGCTAA GTGAAGAAGC TATCGTTATC GAGCCAGACA GTGCACTCGT GTTAAACCTC TCTGGTGCTA TTGTCGATCA AAAGCATTTT GTTGAACCCT TAGAAGCGGC ATTGAATAAG GGCGATGAAG ATAACCCTAA TACTGAAATC TTATTGGCTG ACATTCTTTA TGTTATTCAC AATGCCACTC AGGATAAGCG CATCAAGACT ATCGTGCTTG ATCTTGCTAA CCTGCACTCA GCTAGCGTTA GCAAAATGAC TGCCATTGGT GATGCCCTAA ATGAATTTAA AGCCACGGGT AAAACCGTTG TCGCACACGG TAACTACTTC AATCAGAATC AATATTTCCT CGCAAGCTAT GCCAGTAAAA TTTATTTGAA CAACCAAGGC ATGGTGTCAT TAGATGGCCT GAGCCGTTAT CGCTTATATT ATAAATCCGC CTTAGAAAAA CTTAAAATCA ACACTCATGT ATTCCGTGTG GGTACGTTTA AGTCGGCTGT GGAGCCTTTT ATACGTGATG ACATGTCTGA GGCAGATAAG GCGTCCAGCA ATGCGCTATT AAGCGATATT TGGAGTAGCT ACAGTCATAT AGTCAGCCAA AATCGCGGCA TAAGCCCAGA TGCGCTTGTT CTAAGCCCTG AGCGTTATTT GTCTGAGCTT GATACTAACG AAGGCGATAG CGCTAAAATG GCACTGACAA TGAAGTGGGT TGACGAGTTG GTCTCGGCCG AAGACTTCAG ACTGGCGATG ATAGCCTCTA TTGGCGCCGC AAAAGATGCC CAGCACTTCC GCCAAGTGAA GTTTGCGGAT TACTTAAGCC TTGTTAAACC CCTCACCCGT TTTATTGAAA AAGACGCCGT TGGCATCATA GTGGCCAAGG GCAACATTCT TAATGGCCAT CAACAAGCCG GTGATATTGG CGGCGAAAGC ACTTCAGAAT TACTGCGTAA GGTAAGATTT GATGACAAGA TTAAGGCCCT AGTACTTCGT GTTGACAGCC CTGGCGGCAG TGCTTTTGCA TCGGAGCAAA TTCGACAAGA AGTGCTGGCT ATTCAGGCTG CGGGTAAGCC CGTGGTCGTG AGTATGGGCA GTATGGCAGC ATCTGGGGGT TACTGGATTT CAGCCAGTGC CGATTATATT TATGCCACGC CAACGACACT AACAGGCTCC ATCGGCATTT TCGGCATGTT TGCTACCTTT GAAGAAGCGC TAGCGCAAAT TGGCATCAAT AGCGATGGGG TTGCCACTTC TGATTGGGCT GGGCTTTCGG TTGCAAGACC ACTGAATAGC AATGTAGAAG CGGTTATTCA ACGTCATATA GAACGGGGTT ATCATGAATT TATTTCTTTG GTGGCAACCG AACGTAACAT GACCTTAGAG CAAGTCGACG CCATTGCCCA GGGCCGAGTA TGGACCGGGA AAAAAGCCTT AGAACTTGGC TTAGTCGATG AAATCGGTGA TATGGATATT GCGGTCGCAA AAGCAGCCGA ACTTGCCAAG ATGAGTACTT TCGATACTAA ACTTATCGAG CAAGAACTCA CCCCTGAGCA GCTATTTGTT CAGCAAGTGT TTAGCGTAAC CGCCGCCTAC TTGCCTCAAA GCTTGCAAAA AACCAGTGTA ATGGAAACCC TGCTTGCCCA GTGGGCCGGA GTACTGGAAG AGTTCAAAGC ATTTGATGAC CCCAATGGTG TCTACCTATA TTGCGATCTC TGTAATTACT AA
|
Protein sequence | MTAKPSFFKR FFLFLWNTIN GTRKLILNLI FFSLLALIAV ALLSEEAIVI EPDSALVLNL SGAIVDQKHF VEPLEAALNK GDEDNPNTEI LLADILYVIH NATQDKRIKT IVLDLANLHS ASVSKMTAIG DALNEFKATG KTVVAHGNYF NQNQYFLASY ASKIYLNNQG MVSLDGLSRY RLYYKSALEK LKINTHVFRV GTFKSAVEPF IRDDMSEADK ASSNALLSDI WSSYSHIVSQ NRGISPDALV LSPERYLSEL DTNEGDSAKM ALTMKWVDEL VSAEDFRLAM IASIGAAKDA QHFRQVKFAD YLSLVKPLTR FIEKDAVGII VAKGNILNGH QQAGDIGGES TSELLRKVRF DDKIKALVLR VDSPGGSAFA SEQIRQEVLA IQAAGKPVVV SMGSMAASGG YWISASADYI YATPTTLTGS IGIFGMFATF EEALAQIGIN SDGVATSDWA GLSVARPLNS NVEAVIQRHI ERGYHEFISL VATERNMTLE QVDAIAQGRV WTGKKALELG LVDEIGDMDI AVAKAAELAK MSTFDTKLIE QELTPEQLFV QQVFSVTAAY LPQSLQKTSV METLLAQWAG VLEEFKAFDD PNGVYLYCDL CNY
|
| |