Gene Sden_1901 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_1901 
Symbol 
ID4018389 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp2233023 
End bp2234864 
Gene Length1842 bp 
Protein Length613 aa 
Translation table11 
GC content45% 
IMG OID637955922 
Productsignal peptide peptidase SppA, 67K type 
Protein accessionYP_562907 
Protein GI91793256 
COG category[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0616] Periplasmic serine proteases (ClpP class) 
TIGRFAM ID[TIGR00705] signal peptide peptidase SppA, 67K type
[TIGR00706] signal peptide peptidase SppA, 36K type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000029404 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCGCTA AACCATCGTT TTTTAAAAGA TTCTTTTTAT TTTTGTGGAA TACCATCAAT 
GGCACTCGCA AACTTATTCT TAACCTTATT TTTTTCTCAC TATTGGCCTT AATCGCCGTT
GCCCTGCTAA GTGAAGAAGC TATCGTTATC GAGCCAGACA GTGCACTCGT GTTAAACCTC
TCTGGTGCTA TTGTCGATCA AAAGCATTTT GTTGAACCCT TAGAAGCGGC ATTGAATAAG
GGCGATGAAG ATAACCCTAA TACTGAAATC TTATTGGCTG ACATTCTTTA TGTTATTCAC
AATGCCACTC AGGATAAGCG CATCAAGACT ATCGTGCTTG ATCTTGCTAA CCTGCACTCA
GCTAGCGTTA GCAAAATGAC TGCCATTGGT GATGCCCTAA ATGAATTTAA AGCCACGGGT
AAAACCGTTG TCGCACACGG TAACTACTTC AATCAGAATC AATATTTCCT CGCAAGCTAT
GCCAGTAAAA TTTATTTGAA CAACCAAGGC ATGGTGTCAT TAGATGGCCT GAGCCGTTAT
CGCTTATATT ATAAATCCGC CTTAGAAAAA CTTAAAATCA ACACTCATGT ATTCCGTGTG
GGTACGTTTA AGTCGGCTGT GGAGCCTTTT ATACGTGATG ACATGTCTGA GGCAGATAAG
GCGTCCAGCA ATGCGCTATT AAGCGATATT TGGAGTAGCT ACAGTCATAT AGTCAGCCAA
AATCGCGGCA TAAGCCCAGA TGCGCTTGTT CTAAGCCCTG AGCGTTATTT GTCTGAGCTT
GATACTAACG AAGGCGATAG CGCTAAAATG GCACTGACAA TGAAGTGGGT TGACGAGTTG
GTCTCGGCCG AAGACTTCAG ACTGGCGATG ATAGCCTCTA TTGGCGCCGC AAAAGATGCC
CAGCACTTCC GCCAAGTGAA GTTTGCGGAT TACTTAAGCC TTGTTAAACC CCTCACCCGT
TTTATTGAAA AAGACGCCGT TGGCATCATA GTGGCCAAGG GCAACATTCT TAATGGCCAT
CAACAAGCCG GTGATATTGG CGGCGAAAGC ACTTCAGAAT TACTGCGTAA GGTAAGATTT
GATGACAAGA TTAAGGCCCT AGTACTTCGT GTTGACAGCC CTGGCGGCAG TGCTTTTGCA
TCGGAGCAAA TTCGACAAGA AGTGCTGGCT ATTCAGGCTG CGGGTAAGCC CGTGGTCGTG
AGTATGGGCA GTATGGCAGC ATCTGGGGGT TACTGGATTT CAGCCAGTGC CGATTATATT
TATGCCACGC CAACGACACT AACAGGCTCC ATCGGCATTT TCGGCATGTT TGCTACCTTT
GAAGAAGCGC TAGCGCAAAT TGGCATCAAT AGCGATGGGG TTGCCACTTC TGATTGGGCT
GGGCTTTCGG TTGCAAGACC ACTGAATAGC AATGTAGAAG CGGTTATTCA ACGTCATATA
GAACGGGGTT ATCATGAATT TATTTCTTTG GTGGCAACCG AACGTAACAT GACCTTAGAG
CAAGTCGACG CCATTGCCCA GGGCCGAGTA TGGACCGGGA AAAAAGCCTT AGAACTTGGC
TTAGTCGATG AAATCGGTGA TATGGATATT GCGGTCGCAA AAGCAGCCGA ACTTGCCAAG
ATGAGTACTT TCGATACTAA ACTTATCGAG CAAGAACTCA CCCCTGAGCA GCTATTTGTT
CAGCAAGTGT TTAGCGTAAC CGCCGCCTAC TTGCCTCAAA GCTTGCAAAA AACCAGTGTA
ATGGAAACCC TGCTTGCCCA GTGGGCCGGA GTACTGGAAG AGTTCAAAGC ATTTGATGAC
CCCAATGGTG TCTACCTATA TTGCGATCTC TGTAATTACT AA
 
Protein sequence
MTAKPSFFKR FFLFLWNTIN GTRKLILNLI FFSLLALIAV ALLSEEAIVI EPDSALVLNL 
SGAIVDQKHF VEPLEAALNK GDEDNPNTEI LLADILYVIH NATQDKRIKT IVLDLANLHS
ASVSKMTAIG DALNEFKATG KTVVAHGNYF NQNQYFLASY ASKIYLNNQG MVSLDGLSRY
RLYYKSALEK LKINTHVFRV GTFKSAVEPF IRDDMSEADK ASSNALLSDI WSSYSHIVSQ
NRGISPDALV LSPERYLSEL DTNEGDSAKM ALTMKWVDEL VSAEDFRLAM IASIGAAKDA
QHFRQVKFAD YLSLVKPLTR FIEKDAVGII VAKGNILNGH QQAGDIGGES TSELLRKVRF
DDKIKALVLR VDSPGGSAFA SEQIRQEVLA IQAAGKPVVV SMGSMAASGG YWISASADYI
YATPTTLTGS IGIFGMFATF EEALAQIGIN SDGVATSDWA GLSVARPLNS NVEAVIQRHI
ERGYHEFISL VATERNMTLE QVDAIAQGRV WTGKKALELG LVDEIGDMDI AVAKAAELAK
MSTFDTKLIE QELTPEQLFV QQVFSVTAAY LPQSLQKTSV METLLAQWAG VLEEFKAFDD
PNGVYLYCDL CNY