Gene Sden_1862 details

Gene Information

• Locus tag: Sden_1862
• ID: 4018350
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: +
• Start bp: 2189433
• End bp: 2191328
• Gene Length: 1896 bp
• Protein Length: 631 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 637955883
• Product: GGDEF domain-containing protein
• Protein accession: YP_562868
• Protein GI: 91793217
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2200] FOG: EAL domain; [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.0100434
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGTCTTT CTCGTTCCGT TCAGCTTATG CTATTCATCG TATTTACCGT CTTGCTCGGC 
TGTAGCTATT TAAGCGCGCA GCAGCAAATT AATCTGAGTT CTAAACAAGC GGTAAACCAA 
GCTGCAAAAA ATATTGCAAA ATTTCGTGAT TGGCAAAGCG ATGGTAAAAG CCTCTATCAG 
GCATTAAGTC AGGATGATTC ATTTCAATTT TTTCAATTCA TTCATGGGAC CGATGGCAGC 
CTCAATTTTA CCCACGGCAG TTTGGCGGAA AACCAAGAAA ACGTTATCGG TAACATGTTT 
TCCTTAGACT TAGACAGCAC CGCTGAGTTT CCACAGGCTA GGCTGCAGAT TAGGTTAGAT 
AAAAATAAAG TCTTGGCGGC AGAATTCAAT GGCCTGAGTC ATTTTATCGT GTTCATATTA 
TTGGCGTACC TTGTATTAAG CCTGATGTTT GCTGTATTTA TGCGCCTTCA TAAACAGCGC 
ATCGTCTACG CCGCTGAGTG TATAAAGCAC ATGTCAGAGC TTTCGTTTGA TGCCATAGAA 
ACCTCAAGGC TCACAGGGTC ACTCATCCCT ATTGGTGATG CGTTGGAATA TTGCCGCGCC 
GGGCTCAAAC TAAGTCTTGA TAAAGTGAAG CGAGAAAATG AAGCCCTCAC TAAAGCGGCC 
TATCAAGATC CGCTAACAGG ATTTGCAACT CGGCAACGTT TCACTCAGCA TTTGGATGTA 
ATTGCAAACC TGCACCAAGA GAAAAGTGGT CTTTTTGCCA TGATAAAGGC AACCGAACTT 
GGCAACATTA ATCAACTTTT TGGCCGCAGT GCCGGAGATG ATTATTTAGC TAAGGTCGCA 
ACTTGCATTC GTAAAGCAGC CCAAGATTAC ACCCAGTTTG ATATTTATCG TATTTCCAGT 
GGTGACTTCG CGGTCATTTT TCCCGATATT CCTTTAAAAG AAAGCGCTAA ATTTATCGAT 
AATTTAAAGC TACATTTAGA CGAATACGGT CAGAGTACCA ATGTCGATGC TGTCGCCCAC 
GCAGGCGTCA TACCCTATCA AGGCCAAACT AAGGCCGCCG CACTGTTATC CCTTGCCGAT 
ACCGCCGTGA GTATTGCTCA GACGTTAGGG CCTAACCGTT CCCATATCAT TGAAAAACAA 
GATGAGCAAC AAAATTCCGG CGATCATCAC TGGCGCAATA CCATTAATGA ACTTATCCAG 
AAAAAAAGCA TTATTTTTCA TCAGCAGCCC ATTCAACCCA GTCAGCATAA TGTTGAAGTC 
TACCGAGAAT TATTGACCCG TTTCATGAAT GCCCAAGGTG ACGTATTGCC AACCACTAGC 
GTCATCGCCA TGGCGGAACG CTATGGACTG CATACCGAAC TGGATTCCAT GATAGTCAAC 
CAAGTACTGA AATTGTTGAG CAAAAATCCA AGTATCACCG GTAAATTTGG GGTAAACATC 
AGCGCATCAT CCATTTTACA AGACAGTTTT GTCTTCTGGT TAAGGGACAT TTTATCTAAA 
CATGCACAAT TGGCGTCGCG GATCATTTTT GAAGTCAATG AAGTCGGCAT GCAAACCAAC 
CTTGCCGCCA GCCAACGCTT TGTCAGCGAG ATGCACAAAG TCGGCAGTAA AGTCGCCGTT 
GAGCGTTTTG GTTTGGGCTT TACTTCCTTC AAATTTTTCC GCGAAGTGCG TCCTGATTAC 
ATTAAACTCG ACAGCAGCTA CAGCGATGGC ATAGAACAAG ACAATAACAA TCGCTTTTTT 
ATCCGTATGA TTGTCGATAT TGCCAAACGG ATAAGTATCA AGGTCATCGC CACTGGCGTT 
GAGAGGCAAG ATGAAAAGCT CACCTTAGAA AAATTGTTAC TGGATGGACT ACAGGGCTAT 
TACATCGCCA AACCAGAGAA GATAATCACC CCATAG 

 

Protein sequence

MGLSRSVQLM LFIVFTVLLG CSYLSAQQQI NLSSKQAVNQ AAKNIAKFRD WQSDGKSLYQ 
ALSQDDSFQF FQFIHGTDGS LNFTHGSLAE NQENVIGNMF SLDLDSTAEF PQARLQIRLD 
KNKVLAAEFN GLSHFIVFIL LAYLVLSLMF AVFMRLHKQR IVYAAECIKH MSELSFDAIE 
TSRLTGSLIP IGDALEYCRA GLKLSLDKVK RENEALTKAA YQDPLTGFAT RQRFTQHLDV 
IANLHQEKSG LFAMIKATEL GNINQLFGRS AGDDYLAKVA TCIRKAAQDY TQFDIYRISS 
GDFAVIFPDI PLKESAKFID NLKLHLDEYG QSTNVDAVAH AGVIPYQGQT KAAALLSLAD 
TAVSIAQTLG PNRSHIIEKQ DEQQNSGDHH WRNTINELIQ KKSIIFHQQP IQPSQHNVEV 
YRELLTRFMN AQGDVLPTTS VIAMAERYGL HTELDSMIVN QVLKLLSKNP SITGKFGVNI 
SASSILQDSF VFWLRDILSK HAQLASRIIF EVNEVGMQTN LAASQRFVSE MHKVGSKVAV 
ERFGLGFTSF KFFREVRPDY IKLDSSYSDG IEQDNNNRFF IRMIVDIAKR ISIKVIATGV 
ERQDEKLTLE KLLLDGLQGY YIAKPEKIIT P