| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1814 |
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| Symbol | |
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| ID | 4018297 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 2139802 |
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| End bp | 2140932 |
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| Gene Length | 1131 bp |
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| Protein Length | 376 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637955831 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_562821 |
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| Protein GI | 91793170 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.93447 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCACTG ACGTAACCCA ACTTGCCATG GCGCTTATCG CCCGCCCGTC TGTAACGCCT
TTAGACGAAG GTTGTCAAAC CTTGATGGGT AAACACTTAT CCGCGGCGGG TTTTACCTTA
GAGCCCATGG TGTTTGAGGA TACCACTAAC CTATGGGCGC GACGCGGCAC ACAGGCACCG
GTTTTTTGTT TTGCTGGCCA CACAGACGTT GTGCCTATAG GGGATCTTGC CCGCTGGCAC
ACTCCTCCTT TTGAGCCGAC CATCATAGAT GGTTATTTAC ACGGCCGCGG CGCTGCTGAC
ATGAAAGGTT CACTTGCCGC CATGTTGGTG GCAACTGAAC GTTTTGTTGC TAAACATCCG
CATCATAACG GCTCGATTGC TTATTTAATC ACCAGCGATG AAGAAGGCCC TTTCATCAAT
GGCACCACTC GAGTGATAGA CACCTTAGAA GCCCGCAATG AGAAAATTAC TTGGGCACTC
GTTGGTGAAC CATCATCCAC CTATAAACTC GGCGATGTCG TAAAAAATGG CCGCCGTGGT
AGCTTAACGG GGAATTTAAC CGTCAATGGC GTGCAAGGTC ACGTGGCCTA CCCTCATCTT
GCTGACAACC CTATTCATAA GGCTGCCCCA GCACTGACTG AGCTTGCGCA AATGCACTGG
GATAATGGCA ATGAGTTTTT CCCGCCCACC AGTTTCCAAA TCGCCAATAT CAATGGCGGC
ACAGGTGCAT CGAATGTGAT CCCTGGTAAC CTAGAGGTCA TGTTTAACTT CCGCTACTCA
ACCGAAGTCA CAGCCGATGA GCTCATCGCG CGAGTGCTTG GGATTTTAGA TGCCCACGGC
CTAGATTATG ACATCAGCTG GGTATTCAAT GGTCTGCCAT TTTTAACCGG AGATGGCCCG
TTACTTGAAG CCACTAAAAG TGCCATTCGT GAAGTCACAG GTTATGATAC AGATCCACAA
ACCACAGGCG GCACCTCAGA TGGGCGTTTT ATTGCGCCAA CCGGAGCCCA AGTTATTGAG
TTAGGTCCAG TAAATGCCAC CATACATAAG GTCAATGAGT GTGTAAAGAT TGCCGATTTA
GAGCAATTGG CTCTTTGCTA TGAAAAGCTT TTGGAAAAAC TCTTGTGCTA A
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| Protein sequence | MSTDVTQLAM ALIARPSVTP LDEGCQTLMG KHLSAAGFTL EPMVFEDTTN LWARRGTQAP
VFCFAGHTDV VPIGDLARWH TPPFEPTIID GYLHGRGAAD MKGSLAAMLV ATERFVAKHP
HHNGSIAYLI TSDEEGPFIN GTTRVIDTLE ARNEKITWAL VGEPSSTYKL GDVVKNGRRG
SLTGNLTVNG VQGHVAYPHL ADNPIHKAAP ALTELAQMHW DNGNEFFPPT SFQIANINGG
TGASNVIPGN LEVMFNFRYS TEVTADELIA RVLGILDAHG LDYDISWVFN GLPFLTGDGP
LLEATKSAIR EVTGYDTDPQ TTGGTSDGRF IAPTGAQVIE LGPVNATIHK VNECVKIADL
EQLALCYEKL LEKLLC
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