Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_1782 |
Symbol | |
ID | 4018261 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 2105964 |
End bp | 2107904 |
Gene Length | 1941 bp |
Protein Length | 646 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 637955795 |
Product | ATP-dependent DNA helicase RecQ |
Protein accession | YP_562789 |
Protein GI | 91793138 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0514] Superfamily II DNA helicase |
TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGATACAGA GCAGTTATCT ACCCCAGCTT AAGGCCCAGT TTGGTTTCGA TGCATTTCGT GATGGACAGC AGCAGGTCAT CGATTCCATC TTATCAAACA ACAGCGCATT GGCCATTTTC CCAACGGGTT CTGGCAAGTC TCTATGCTAT CAATTTTGCG CCCTGCAATT ACCCCATGTG ACCTTAGTGA TATCTCCTTT ACTGGCCTTG ATGAAAGATC AACTGGCGTT TCTACATGGT AAAGGCATAG CGGCAGCAAG CATAGACTCG AGTTTGACTG CGGCAGGATC CCGCCAAGTG ATGCAGGATA TACGACAAGG CAAAATAAAA ATCTTAATGG TGTCAGTAGA GCGGTTTAAT AACGAGCGTT TTCGCCATTT TCTGCAAGGA ATAGAGATTT CATTATTAGT GGTCGATGAA GCCCACTGTA TTTCTGAGTG GGGCCATAAT TTTAGACCCG ATTACTTAAA AATCCCTCAG TACTGTCAAG ACTTTGCTAT CGACAAGGTA CTATTGCTGA CAGCGACAGC AACCAGAAAA GTTAAGCAAG ATATGACTGA GCGTTTTGCG ATAGCAGAGA CTCATATCGT TCAGACAGGC TTTTATCGTG ACAACTTAGC ATTAACCGTG CTTAGCATCC CGCAAGCACA GAAAAATACT GAGTTAGTAA AGCAATTACA GGGATTGGCA GGTGCAGGGA TTGTTTACGT CACCTTGCAG CATACCGCTG ATGACATAGC CTATTTTTTA CAGCGCCAGG GTTTTAATGC TAAAGCCTAT CATGCGGGGA TGGATCAAGA AGTACGCCAA CAAGTTCAAC AGGACTTTAT GTCAGGTCTT GTGAACATCA TAGTTGCCAC TATTGCCTTT GGCATGGGCA TAGATAAAGG CGATATTCGC TTTGTTATCC ATTATGACTT ACCTAAATCC ATCGAAAATT ACAGTCAGGA GATTGGCCGT GCGGGGCGCG ACAACTTGCC TTCCCAATGC ATTACCCTTG CAAACCTTGA TGGCCTAAGT ACAGTAGAAA ATTTTGTTTA CGGTGATACC CCTGAAGCCG GCAGTATTAG GATCTTATTG CAGCATATGC AGAGCACACG GCAAGGTAAC CGCTGGGAAA TGCAAGAGTT AAGCTTGTCC AAGCTCACTA ACATACGTGT GCTCCCTCTA AAAACCTTAC TGGTGCAGTT AGAGCTACTT GGGCTGCTTA AACCCAGTCA TGCCTACTAT GCCGATTGCC GCTTTAAATT TATTAGTACA GAAGCTGAAG TGTTGGCCTT ATTCACCGAG GAGCGACGTG AGTTTCTCAA GCAAGTGTTT GCCCATACTC ATTTTAAAAA AGTGTGGGGC ACAGTGGATT TTGATGGCCT CTATCAAGCG TTCGGGCATG AAAGGCAAAG GGGGCTTAAA GCACTGGACT ATCTCAGTGA ACAGGGACAT ATTCAACTTG AGACTAAGCA ACTCACGCAA GTTTTTGAGC TTACAGTCAA TGAGATTGAT ATTGAGGCCT TAACATCACA ATTGCTTGGC TATTTTGAGG ATAAAGAAAC TAAAGAAATC GCCAGAATTG CACAGTTAAT TCGCTTTTTT GAATTAAACA CTTGCTTAAG CCACGCCTTG GCACGATATT TTGATGATAT GAACAGCCCA GCATACTGCA TGAATTGCAG TGTCTGTCTT GGAAAAAGTG TTCAGTTAAC CGCAAGCTCA ATTACACCTA TGCCACCCAA GGAGGTACTG GCTGCTCATT TAAAAGACTT GCAAATTTGG GCCGAGGGAC AAGGTTTTTC TCACGCCTTA TCTGTTAGTA TGCAGACTAA GTATTTGATG GGACTGAGCA TGCCTGCATT TAGCCGTAGT GGCATTACAA AACTTGCAGG TTTTGGTTTC TGTTCAGAGC AAGGCTTTCA TCAAGTTAGA TGTGCAATCA ATGACTTATA A
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Protein sequence | MIQSSYLPQL KAQFGFDAFR DGQQQVIDSI LSNNSALAIF PTGSGKSLCY QFCALQLPHV TLVISPLLAL MKDQLAFLHG KGIAAASIDS SLTAAGSRQV MQDIRQGKIK ILMVSVERFN NERFRHFLQG IEISLLVVDE AHCISEWGHN FRPDYLKIPQ YCQDFAIDKV LLLTATATRK VKQDMTERFA IAETHIVQTG FYRDNLALTV LSIPQAQKNT ELVKQLQGLA GAGIVYVTLQ HTADDIAYFL QRQGFNAKAY HAGMDQEVRQ QVQQDFMSGL VNIIVATIAF GMGIDKGDIR FVIHYDLPKS IENYSQEIGR AGRDNLPSQC ITLANLDGLS TVENFVYGDT PEAGSIRILL QHMQSTRQGN RWEMQELSLS KLTNIRVLPL KTLLVQLELL GLLKPSHAYY ADCRFKFIST EAEVLALFTE ERREFLKQVF AHTHFKKVWG TVDFDGLYQA FGHERQRGLK ALDYLSEQGH IQLETKQLTQ VFELTVNEID IEALTSQLLG YFEDKETKEI ARIAQLIRFF ELNTCLSHAL ARYFDDMNSP AYCMNCSVCL GKSVQLTASS ITPMPPKEVL AAHLKDLQIW AEGQGFSHAL SVSMQTKYLM GLSMPAFSRS GITKLAGFGF CSEQGFHQVR CAINDL
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