| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1753 |
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| Symbol | rpsA |
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| ID | 4018231 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 2074817 |
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| End bp | 2076484 |
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| Gene Length | 1668 bp |
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| Protein Length | 555 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637955766 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_562760 |
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| Protein GI | 162210774 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000000374073 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGAAT CTTTTGCTGA TCTATTTGAA CAATCCCTTC TAACTCTGGA GTTCCGTCCA
GGTTCTATCG TTCGTGGTAC TGTTGTTGCC ATCGAAAACG GTATGGTACT TGTTGACGCT
GGTCTTAAGT CAGAAAGCCC AATTTCTGCT GACGAATTCA AAAACGCTCA AGGTGTTTTA
GAAATTCAAG TTGGTGATGA AGTTGATGTT GCGCTTGACT CTGTTGAAGA TGGCTTCGGT
GAGACTCAAT TGTCTCGCGA AAAAGCTAAG CGCCATGAAG CGTGGATCGT TCTAGAAAAA
GCGTACGAAG ATGCTGAAAC TGTAATCGGT ATCATCAATG GTAAAGTTAA AGGCGGTTTC
ACTGTTGAAT TAAACGGTAT CCGTGCCTTC TTACCAGGTT CTCTAGTTGA CGTGCGCCCA
GTTCGCGACA CCGCTCACTT AGAGTACAAA GAATTAGAAT TCAAAGTTAT CAAGCTTGAT
CAGAAGCGCA ACAACGTTGT TGTTTCTCGT CGTGCTGTTA TCGAATCAGA AAGCAGTGCT
GAGCGTGATG CACTTCTTGA AAATCTACAA GAAGGCCAAG CAGTTAAGGG TATCGTTAAG
AACCTAACTG ACTACGGTGC ATTCGTAGAT TTAGGTGGCG TTGACGGTCT ACTGCATATC
ACAGATATGG CGTGGAAGCG TGTTAAGCAC CCATCTGAAA TCGTTAATGT TGGTGACGAA
ATCAACGTTA AAGTACTTAA GTACGATCGT GAGCGCACTC GTGTGTCACT AGGTCTTAAG
CAACTTGGCG AAGATCCATG GTTAGAAATC AGCAAGCGTT ACCCAGAAAG CACTAAGCTA
TCTGGTCGCG TAACTAACCT AACTGACTAC GGTTGCTTCG TAGAAATCGA AGAAGGCGTG
GAAGGTTTAG TACACGTTTC TGAAATGGAT TGGACTAACA AGAACATTCA CCCATCTAAA
GTTGTTAACT TAGGTGATGA AGTTGAAGTG TTAGTACTAG ACATAGACGA AGAACGTCGT
CGTATTTCTC TAGGCCTGAA ACAGTGTAAA GTTAACCCAT GGGATGACTT CGCAACTCGT
TACAATAAAG GCGACAAGGT TTCTGGTAAG ATCAAGTCAA TCACTGACTT CGGTATCTTC
ATCGGTCTTG ACGGCGGCAT AGATGGTCTA GTTCACCTAT CTGACATTTC TTGGAACGGC
ACTGGCGAAG ACGCAGTATC TGAGTACAAG AAAGGCGACG AAATCCATGC AGTGGTTCTT
TCAGTAGACC CAGAGCGTGA GCGCATCAGC TTAGGCGTTA AGCAAACTGA AGATGATCCA
TTCAACGCAT ACCTAGCTGA CAAGAAGAAA GGCACCGTAG TTAACGGTAC TGTTTCTGCT
GTTGATGCAA AAGGCGTGAC TGTTGAACTA GCTGACACAG TTGAAGGTTA CGTTCGCGTA
GCAGACATTT CAGCTGAGCG TATCGAAGAT GCATCTACTG TCTACACTGT AGGTGATGCA
ATCGAAGCTA GATTCATGGG TGTTGATCGC AAGAACCGTT CTATCAGCCT ATCTATCAAA
GCGAAAGATG AAGCTGAACA GAAAGAAGCG ATTGCTACTC TGAACAAGCA AGATGACGTT
GTGATCAGCA ATGCAATGGC TGAAGCATTT AAAGCAGCTC GCAAGTAA
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| Protein sequence | MTESFADLFE QSLLTLEFRP GSIVRGTVVA IENGMVLVDA GLKSESPISA DEFKNAQGVL
EIQVGDEVDV ALDSVEDGFG ETQLSREKAK RHEAWIVLEK AYEDAETVIG IINGKVKGGF
TVELNGIRAF LPGSLVDVRP VRDTAHLEYK ELEFKVIKLD QKRNNVVVSR RAVIESESSA
ERDALLENLQ EGQAVKGIVK NLTDYGAFVD LGGVDGLLHI TDMAWKRVKH PSEIVNVGDE
INVKVLKYDR ERTRVSLGLK QLGEDPWLEI SKRYPESTKL SGRVTNLTDY GCFVEIEEGV
EGLVHVSEMD WTNKNIHPSK VVNLGDEVEV LVLDIDEERR RISLGLKQCK VNPWDDFATR
YNKGDKVSGK IKSITDFGIF IGLDGGIDGL VHLSDISWNG TGEDAVSEYK KGDEIHAVVL
SVDPERERIS LGVKQTEDDP FNAYLADKKK GTVVNGTVSA VDAKGVTVEL ADTVEGYVRV
ADISAERIED ASTVYTVGDA IEARFMGVDR KNRSISLSIK AKDEAEQKEA IATLNKQDDV
VISNAMAEAF KAARK
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