Gene Sden_1619 details

Gene Information

• Locus tag: Sden_1619
• ID: 4018094
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: +
• Start bp: 1882873
• End bp: 1884762
• Gene Length: 1890 bp
• Protein Length: 629 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 637955629
• Product: helicase c2
• Protein accession: YP_562626
• Protein GI: 91792975
• COG category: [K] Transcription; [L] Replication, recombination and repair
• COG ID: [COG1199] Rad3-related DNA helicases

Plasmid Coverage information

• Num covering plasmid clones: 26
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGGCCAA ATGGCGCCTT GTCTCGCCAC GTGCTTAAAT ACCGCAGTCG TCAGATCCAA 
ATCGATATGG CGCTGGCTGT GTGTGAGGCG ATAGAGCACA AGCAAAACTT GGTGGTAGAA 
GCGGGCACTG GGGTGGGTAA AACCTTTGCT TATCTTATTC CAGCGCTCCT GAGTGGCAAG 
CAAGTGCTGC TAAGCACTGG CAGTAAAAAC CTTCAAGATC AGCTGTTTTA CAAAGACTTA 
CCCGCGTTAC TTACCATGCT TAAATTGCAC CCTAAGCTTG CTTTACTTAA AGGCCGCAGC 
AATTATTTGT GTCAACTTCG GCTCGGGCAA GCCATGGAAT ATGCCAGCCG AAATAGTGAG 
CAGGCGCTGG ATCATTTACT GAAAATTTCC CAGTGGGCCA GCGTGACCAA GGACGGTGAT 
ATCGGCAATT TAACCACAGT GCCAGAGCAC AGTAATGTGA TTGAAACCGT AGTGAGCACA 
AAAGAAAGCT GCACTGGCAG TCACTGTGGC CATTATGAAG CCTGCTTTAC CCGCAAAGCA 
CGCCTCAGAG CCATGGAAGC CAAGGTTATT GTGGTTAATC ATCATTTATT TTTTGCCGAT 
AAACTGCTTA AAGACACCGG CTTTGCCGAG ATTTTGCCCG ATGCAGATAT CGTGATATTC 
GATGAGGCCC ATCAACTGCC GGATATCAGC ATTCGCTATT TTGGCCAACA GTTTTCAACT 
AAACAGATTA CCAGTTTGCT GGCTCATGTG ATGGACATTC AGCGCCAAGA GCTAGGGGAC 
ACGATTCAAA TCAGTGAGTG TTGCCAGCAA GCGGGGCTTG CCCTCAGCCA ATGGCTCGAT 
GCCCTTAATC AATCTCAACT AACAGATTGG CGTAACGCAT TAAAAGATAA AGGTTTATCT 
CAGCTATCAT GGGCATTGTT GGCGGCGTTA ACTCAAATAA GTCAACTGCT TTTACATCAT 
CTAGGGCGAA GTGAAGCGCT TGATCTTGCC GTTGAGCGCT TACAAGCGCT CACGCCTAAG 
CTTGCTGCCT TTTTTGAATG TAATGACGTG CAAGCGGCCT ACAGCGTGGC ACTCAATCGT 
GGCGGGGCTA TGTTAAGTAT TTCACCCATA GATGTGGCTA AACAATGCCA GAGTTTATTT 
GCAACCGATA CACGATGGAT TTTCACCTCG GCGACCCTGC AGATGGAGCG CTCCTTAGGG 
CACTTTTGCA AGCAAATTGG TCAGGCTAAG GCGAGGCAAC TCATCATGGA TAGCCCGTTC 
GATTACCCGA AACAGGCGCT TTTTTGCGTG CCGCGGCATT TAGCTAAATC TGCCCAAGGG 
TCGCAAACAG CCAAGCAACT GGTGGATATT TGCGTGCCTG CCATTAATGC CGCCAAAGGG 
CGTACCTTTG TGCTATTTAC CAGTCATCAG ATGTTAGAGC AGGTGGCATT ATTGCTTAGA 
ACAAGAGTGA ATTACCCCTT ATTGGTGCAG GGCCAAGGTA GCAAGCAGCA CTTATTGGAT 
AAATTTAAAC TCTTAGGCAA TGCGGTATTA CTGGGTACTC AGAGCTTTTG GGAAGGGGTG 
GATGTGCGCG GCAGAAATTT AAGTTGCGTC ATCATAGATA AATTGCCCTT TGTGCAGCCC 
GATGACACCT TGTACCGTGC AAGAGCTGCC AATGCCGAGC GCCAAGGGCA TGATCCTTTT 
AGCCATATTT CATTGCCCCA AGCTGTGATC AGTCTCAAGC AGGGGGTTGG GCGGCTTATT 
CGCGATGAAA GGGACGCAGG GGTGCTCATC TTGTGTGACA ATCGCATCGT AAATCGTGCT 
TATGGGCAAG CTTTTGTGCT GTCTTTACCG CCAATGAGCC GGACTCGGGA TTTAGATAAG 
GCGCTGCACT TCTTAAAACA GATCCCATAA 

 

Protein sequence

MGPNGALSRH VLKYRSRQIQ IDMALAVCEA IEHKQNLVVE AGTGVGKTFA YLIPALLSGK 
QVLLSTGSKN LQDQLFYKDL PALLTMLKLH PKLALLKGRS NYLCQLRLGQ AMEYASRNSE 
QALDHLLKIS QWASVTKDGD IGNLTTVPEH SNVIETVVST KESCTGSHCG HYEACFTRKA 
RLRAMEAKVI VVNHHLFFAD KLLKDTGFAE ILPDADIVIF DEAHQLPDIS IRYFGQQFST 
KQITSLLAHV MDIQRQELGD TIQISECCQQ AGLALSQWLD ALNQSQLTDW RNALKDKGLS 
QLSWALLAAL TQISQLLLHH LGRSEALDLA VERLQALTPK LAAFFECNDV QAAYSVALNR 
GGAMLSISPI DVAKQCQSLF ATDTRWIFTS ATLQMERSLG HFCKQIGQAK ARQLIMDSPF 
DYPKQALFCV PRHLAKSAQG SQTAKQLVDI CVPAINAAKG RTFVLFTSHQ MLEQVALLLR 
TRVNYPLLVQ GQGSKQHLLD KFKLLGNAVL LGTQSFWEGV DVRGRNLSCV IIDKLPFVQP 
DDTLYRARAA NAERQGHDPF SHISLPQAVI SLKQGVGRLI RDERDAGVLI LCDNRIVNRA 
YGQAFVLSLP PMSRTRDLDK ALHFLKQIP