| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1597 |
|---|
| Symbol | |
|---|
| ID | 4018072 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 1856912 |
|---|
| End bp | 1859092 |
|---|
| Gene Length | 2181 bp |
|---|
| Protein Length | 726 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637955607 |
|---|
| Product | peptidyl-dipeptidase Dcp |
|---|
| Protein accession | YP_562604 |
|---|
| Protein GI | 91792953 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0339] Zn-dependent oligopeptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000000288176 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGGCC TACGCCTTCG TCCGCTGTTT TCAGCCATGA CATTGACCCT AGCGTTGAGC
GCCTGCTCAG ACAATAGCGA TGCTCAAAAC CAAACCAAGA TAGCTGCAGC GCAAACTTCA
GCGCAGATGA TTGCTCAGCA TGGGGATAAT CCTTTCTTCA AGCAATATGG CACATTCCAA
GAAATCCCCG ATTTTGACAA GATAAAACCG GAGCATTATT TACCGGCATT TAAAGCTGGT
ATTGCCGCTC GTCAAGAAGA AATCATGGCG ATAGTCAATA ACCCAGAAGC ACCAACATTC
GCCAATACTA TTGAAGCTAT AGAGTTCTCT GGAGATTTGT TAACAGCAGT CGCCAGCGTG
TTTTATAACT TAACCAGTGC TCACACCAAT GATGAGTTAC AAGCCATATC AAAAGATGTG
TCGCCTATGC TGTCTTCATC CTCCGATGAC ATTTTCTTAA ATGATGCCCT ATTTCAAAAA
GTGAAAAGCA TCTACGACAA TGCGGCAAAC TTAGGCTTAA ATGCCTCTGA AACGAAATTG
CTAGAAGACA CCTATAAATC CTTCACCCGA GGCGGCGCGA ACTTAAGCCC AGAAGACAAG
CAAACCTTGC GCAGCTTAAA CGAGGAAATC GGCAAGTTAA ACTTAGCCTT TGGTGACAAT
CTGTTGGCAG AAACCAATGC CTTTGAGTTA GTCATTGATA AAAAAGAAGA TCTAGCTGGT
TTACCTCAAA ATGTCATCAG TACGGCAGCA CAAACGGCCA CTAAGCGTGG CCACGATGGA
AAATGGGTAT TTACCCCCCA TAGACCTTCT ATCACGCCGT TTTTAACCTA TGCAGATAAT
CGTGACTTAC GTGAAGTATT ATTTAATGGC TATATTAATC AGGCCAATAA CAATAATGAA
CACGATAATA AACTGATCTT AGCCCAAATT GCTTCCCTGC GAGCCCAGCG CGCTCAGTTA
ATGGGTTATC AATCCCACGC CCACTTTGTG CTAGAAGAGC GTACTGCCAA GACGCCTGAA
AATGTCTATG CCCTGTTAAA CAAAGTCTGG CCAGCAGCAC TTAATCAGGC CAAGAGCGAA
GTGGCTGTGA TGCAGGAACT AATAGACAGC CAAGGGGGTA AGTTTAAGCT AGCGGCTTGG
GATTGGGCCT ATTATGCAGA CAAAATCCGC GTTGCAAAAT ACAGCTTTAA TGAACAAGAC
ACACGCCCGT ATTTTTCATT AGAAAATACC TTAAAAGGAG TGTTTTACAC GGCAAATCGT
CTTTATGGCG TCAGCCTCAA AGAACGCACT GACTTGCCAA AATACCACGA GGATGTGCGT
ACTTGGGAAG TTTTTGATAA AGAAGGTAAA CTCATGGCCA TCTTCATGGG GGATTACTTC
GTCCGCGGCA GCAAGCGCGG TGGGGCTTGG ATGAATGCCT ATCGTGAACA GTACAAGATG
AATGGCGTGG ATTCGTTACC TATTATTGTC AATGTACTCA ATTACCCAAA ACCCAGTGGT
AATGAGCCAG CCCTACTGAC ATTTGATGAA GCGAGTACCC TATTCCATGA ATTTGGTCAC
GCTTTACATG GCATCTTGTC AAAGGTTAAA TATCGTTCAC AAGCTGGCAC TTCCGTGCCC
CGCGACTATG TGGAGTTTCC CTCACAGGTC ATGGAAAATT GGATGACTCA GCCTGAAGTC
TTGGCTCAAT TTGCCACTCA TTACCAAACC GGTGAAGTGA TCCCAGAGGC CCTAGTCAAA
AAAATCCAAG CTGCCAGCCA ATTCAACCAA GGCTTTGCCA CCGTTGAATA TATGGCTGCG
ACCAAGCTTG ATTTAGATTG GCACTCGCTT AATGATGATA CAGTCCGTGA TGCCGCCAAG
TTTGAAGCCG ATTCACTGGC TAACATGGGA TTAATCGACG AAATCGTGCC CCGCTATCGC
AGCACCTATT TCTCGCACAT CTTCAATGGC GGATACTCTG CGGGTTACTA CAGCTATCTT
TGGTCGGATA TTCTAGGCGC CGATGCCTTC GAAGCCTTTA AAGAGAATGG GATCTTTGAT
AAAGCCACAG CACAAGCCTT TAAAGACAAT GTGTTGTCAC AAGGTGGCAG CGCCGATCCT
ATGCTGCTGT ACAAGCAGTT CCGCGGCAAA GAAGCCGGCA TTGAACCCCT GCTTAAAAGC
CGTGGTTTAC TGCAAAAATA G
|
|---|
| Protein sequence | MKGLRLRPLF SAMTLTLALS ACSDNSDAQN QTKIAAAQTS AQMIAQHGDN PFFKQYGTFQ
EIPDFDKIKP EHYLPAFKAG IAARQEEIMA IVNNPEAPTF ANTIEAIEFS GDLLTAVASV
FYNLTSAHTN DELQAISKDV SPMLSSSSDD IFLNDALFQK VKSIYDNAAN LGLNASETKL
LEDTYKSFTR GGANLSPEDK QTLRSLNEEI GKLNLAFGDN LLAETNAFEL VIDKKEDLAG
LPQNVISTAA QTATKRGHDG KWVFTPHRPS ITPFLTYADN RDLREVLFNG YINQANNNNE
HDNKLILAQI ASLRAQRAQL MGYQSHAHFV LEERTAKTPE NVYALLNKVW PAALNQAKSE
VAVMQELIDS QGGKFKLAAW DWAYYADKIR VAKYSFNEQD TRPYFSLENT LKGVFYTANR
LYGVSLKERT DLPKYHEDVR TWEVFDKEGK LMAIFMGDYF VRGSKRGGAW MNAYREQYKM
NGVDSLPIIV NVLNYPKPSG NEPALLTFDE ASTLFHEFGH ALHGILSKVK YRSQAGTSVP
RDYVEFPSQV MENWMTQPEV LAQFATHYQT GEVIPEALVK KIQAASQFNQ GFATVEYMAA
TKLDLDWHSL NDDTVRDAAK FEADSLANMG LIDEIVPRYR STYFSHIFNG GYSAGYYSYL
WSDILGADAF EAFKENGIFD KATAQAFKDN VLSQGGSADP MLLYKQFRGK EAGIEPLLKS
RGLLQK
|
|---|
| |