| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1586 |
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| Symbol | |
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| ID | 4018061 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1843575 |
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| End bp | 1844708 |
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| Gene Length | 1134 bp |
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| Protein Length | 377 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637955596 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_562593 |
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| Protein GI | 91792942 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0000231295 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAAACA CTAAGACACT GCGCAATTGG AGCCTGACTT TTATTGCCAT CGCAAGCTTA
GGTTATGGGT TGTATTATTT TAAATCATCG GAAATCTCGG CTCAGGCATC CCAAGCTATG
CCCGAATACC CAGAACCCGT GGACGTGGCT CTGGCGCTAA TGCTTGATTA TAAAGATCAA
GTAACAGTAC CCGCCGAAGT GGTGGCACCG GATGCGATTG TACTCACCAA TGAACTTGCG
GGTACAGTTC GAGCGCTTAA CTTAAAAAAT GGCAATTTAG TGACTAAGGG TGAGCTGTTA
TTACAACTTG ATATTAGTGA AGAAACCGCC AGTTTAAACA CGGCTAAGGC CAAGACGAAA
CTTGCTGCGA CTGAGCTTAA ACGCACCCAA TCCTTGCAAA AAAGACAGTT AGTTGCCGCA
GAAGCCTTGG ACAGAGCCGA AGCCGAGTTA GCAATTAACT TGGCGGAAGT GGATCGCATT
CAAGCCATAA TCGCTAAGAA AACCGTCTAC GCCCCGTTCG ATGGTGTTTT GGGCCTGCAT
GACTTGTCTG TGGGTGAGTA TTTGCCTGCT AACAGCCAAA TCACCAGCCT AGTTGCCGCG
CAAACCCATT TGTGGATAGA TGTGAGCTTG TCTCAGCAGC AGTCACAAAA CCTAACTAAC
GATGAAGTGG AGCTCATACT GACAGATAAA CAAGCGTCAG GGCAGGCCGT CTTTGCCAAG
ATCATAGCTA AAAACCCGCT TATCGATAAG CAAACTCGCA GCGTTAAATA CCGTGCTTTA
TTCAAGCAGA GTCCAGATGT GAACTTAATC CCTGGCGCAT TTATTGAGGT AAATGTTAAG
CAAGGCGAAG CCATTTCCAT GATAAGACTG CCAAAACAGG CGATTTTGCG TCAGCAAGCA
GCTCGCTATG TGTATGTACT GCAACCTGAG TCTGAAGGGC TTTATCGGGT GCAGCGCCGT
GATATCGACT TATTTCAAGA AAATGGTGAG TACAGCTATA TCAAAGGTGG CTTGACTGAA
GGCGAGCAAG TGGTCACGGC AGGGGCATTT AAGTTGTATC CCAATAAGTT GGTTAATATC
CGTCAAGTGG CTGATAACGG CTCAAGCGCT AATGCCTCAA GTGCTAAGGA ATAA
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| Protein sequence | MSNTKTLRNW SLTFIAIASL GYGLYYFKSS EISAQASQAM PEYPEPVDVA LALMLDYKDQ
VTVPAEVVAP DAIVLTNELA GTVRALNLKN GNLVTKGELL LQLDISEETA SLNTAKAKTK
LAATELKRTQ SLQKRQLVAA EALDRAEAEL AINLAEVDRI QAIIAKKTVY APFDGVLGLH
DLSVGEYLPA NSQITSLVAA QTHLWIDVSL SQQQSQNLTN DEVELILTDK QASGQAVFAK
IIAKNPLIDK QTRSVKYRAL FKQSPDVNLI PGAFIEVNVK QGEAISMIRL PKQAILRQQA
ARYVYVLQPE SEGLYRVQRR DIDLFQENGE YSYIKGGLTE GEQVVTAGAF KLYPNKLVNI
RQVADNGSSA NASSAKE
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