Gene Sden_1568 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_1568 
SymbolrnhB 
ID4018042 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand+ 
Start bp1822231 
End bp1822875 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content49% 
IMG OID637955578 
Productribonuclease HII 
Protein accessionYP_562576 
Protein GI91792925 
COG category[L] Replication, recombination and repair 
COG ID[COG0164] Ribonuclease HII 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.0878508 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGACTAAGC AAATTTTACC TTCTGTGATT AAGCTGATAA CCCCAGAGCA AGTCTTGTTG 
CTCAGTGAAG GCTTAGTGGC CGGCGTCGAT GAAGTGGGCC GTGGCCCCCT AATTGGTGAT 
GTGGTGACCG CTGCAGTGAT CTTAGATCCT AACCGGCCCA TAGCAGGCTT AATGGATTCT 
AAAAAGCTCA GTGAGAAGCG CTTGCAAGCT TTGTACCTTG AAATTATGGA CAAGGCCTTG 
GCCGTCAGTG TCGGCCGCGC CAATCCTAGC GAAATCGATG AACTTAATAT TCTTCACGCG 
ACCATGCTTG CCATGAGTCG CGCTGTGGCT GGGCTTAATA TTAAGCCTGA GCGCGTACTG 
GTAGACGGCA ATCGTTTGCC AGAATTTGCC CTCAATGCCG AGGTTGAACG TCATGCCATC 
ATCAAGGGGG ATGGTCTAGT GCCAGCGATT AGCGCGGCGT CTATCATAGC CAAAGTGACC 
CGTGATGAAG AAATGTTGCA GCTCGATGCG CGTTATCCAG AATACGGTTT TGCCAAACAT 
AAAGGCTACC CAACCAAGAC GCATTTTGAG GCGTTAGCCC AATTTGGTGT CTTGCCTGAA 
CACAGAAAAA GCTTTAAACC TGTGGCTTTG AGGTTGTTGT CATAA
 
Protein sequence
MTKQILPSVI KLITPEQVLL LSEGLVAGVD EVGRGPLIGD VVTAAVILDP NRPIAGLMDS 
KKLSEKRLQA LYLEIMDKAL AVSVGRANPS EIDELNILHA TMLAMSRAVA GLNIKPERVL 
VDGNRLPEFA LNAEVERHAI IKGDGLVPAI SAASIIAKVT RDEEMLQLDA RYPEYGFAKH 
KGYPTKTHFE ALAQFGVLPE HRKSFKPVAL RLLS