| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1551 |
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| Symbol | dapD |
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| ID | 4018024 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 1803218 |
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| End bp | 1804042 |
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| Gene Length | 825 bp |
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| Protein Length | 274 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637955561 |
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| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
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| Protein accession | YP_562559 |
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| Protein GI | 91792908 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
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| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAGGCAT TACGCCAACG TATTGAAACT GCATTTGAAA ATCGTCAACA CATCACACCA
GGCACAGTTG AACCTAGCCT GCGTGCCGAT GTTGAAACGG TTATTGCCAT GTTAGACAAA
GGTGAGGCTC GAGTCGCTGA AAAAATTAAC GGCCAGTGGC AGGTACACCA ATGGTTAAAA
AAAGCGGTAT TACTGTCTTT TCGGATATTT GATAACGGCG TCATTGATGG TGGTGACACT
AAATATTTCG ATAAAGTACC GCAAAAATTT GCGGACTACG ATGAAGCCCG CTTTAAAGCC
GAAGCCATTC GCGTTGTTCC ACCTGCCACT GTGCGCAAAG GCTCCTTTAT CGGTAAAAAC
ACTGTGCTTA TGCCCTCTTA CGTAAATTTA GGTGCCTATG TAGATGAAGG CACTATGGTT
GATACATGGG CGACAGTGGG TTCATGTGCA CAAATTGGCA AGAACGTGCA CTTGTCTGGC
GGTGTGGGTA TTGGCGGTGT ACTTGAACCC TTACAGGCTG GCCCAACAAT TATCGAAGAC
AATTGCTTTA TCGGCGCTCG CAGTGAAATC GTTGAGGGCG TAGTGGTTGA AGAAGGCAGC
GTGATTTCTA TGGGGGTCTA TATAGGCCAA AGCACCCGTA TTTTTGATCG TGAAACCGGC
GAAGTGCATT ATGGCCGTGT GCCTGCAGGC TCAGTCGTAG TATCGGGCAA CTTACCCTCA
GCCTGTGGCA AATACAGCTT GTATGCCGCC ATCATAGTCA AAAAAGTTGA CGCTAAGACA
CGTGCTAAAG TCGGTATTAA CGAACTTTTA CGAATCGTAG ATTAA
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| Protein sequence | MEALRQRIET AFENRQHITP GTVEPSLRAD VETVIAMLDK GEARVAEKIN GQWQVHQWLK
KAVLLSFRIF DNGVIDGGDT KYFDKVPQKF ADYDEARFKA EAIRVVPPAT VRKGSFIGKN
TVLMPSYVNL GAYVDEGTMV DTWATVGSCA QIGKNVHLSG GVGIGGVLEP LQAGPTIIED
NCFIGARSEI VEGVVVEEGS VISMGVYIGQ STRIFDRETG EVHYGRVPAG SVVVSGNLPS
ACGKYSLYAA IIVKKVDAKT RAKVGINELL RIVD
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