| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1546 |
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| Symbol | |
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| ID | 4018019 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1798573 |
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| End bp | 1799469 |
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| Gene Length | 897 bp |
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| Protein Length | 298 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637955556 |
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| Product | pseudouridylate synthase |
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| Protein accession | YP_562554 |
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| Protein GI | 91792903 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGCAAA ATAACTCAAA CAATCAATAC AATGAAATGG CCGGTATTTC AAATGACGCA
TTTGATTATG CAGATATTTA TGAGCAAGAA GAAAACGAGT CAGCAGGCGC GGACATTGAA
GTCACTGACG ACATGGATGA GCCTGCGCCA GAATTGACTA TTCTCTATCA AGACGACGAC
ATAGTGGCTA TTCATAAACC AGCAGGTTTA TTAGTGCATC GCAGTTACTT AGCCCGCAAG
GAGCGTTTTT TCGCCATGCA GCTCACTCGG GACTTAATCG GTTGCCATGT GTTTCCTGTG
CATAGACTCG ATAGGCCCAC ATCCGGTGTG TTATTGTTTG CTAAAAGTAG CGAAGTCGCT
CGTAATCTGT GTGAGCAATT TGCCGAACAT AAGATAAAAA AAGACTACTT GGCCTTGGTA
CGGGGCAATA TGCATGAGGC TGGACTGTTG GATTATCCTT TAAGGGTGGA GCTTGATGAT
GTGGCCGATA AACATGCCAA AGCCGATAAA CCCGCCCAAG AAGCACAAAC CAGTTACCAG
CCGTTACTCA ATAGTGAAAT TCCTTTTAGC TCGGGTCGTT ATCCAACCAG TCGTTTCGCG
CTGATAAAAC TAAGCCCTCA TACGGGGCGT AAGCATCAGC TGCGCCGTCA TATGGCGCAT
TTACGTCACC CCATTTTAGG TGATACCACC CATGGTGACG GCAAGCAAAA TAAATTCAGC
CGAGAACACT TCGGTGTAAA TCGCCTATGG CTAATAGCCA AGCGGCTGAG CTTTACCCAT
CCAGTGACTG GAAAACCCAT GACAATTGAA ACTCAAATTG AACAGCAATG GTTGGCAACG
TTCGCTTTAT TGGGTTGGAC TGATGCACAG CTACAACAGC TTGATTTTAT TCAATAA
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| Protein sequence | MPQNNSNNQY NEMAGISNDA FDYADIYEQE ENESAGADIE VTDDMDEPAP ELTILYQDDD
IVAIHKPAGL LVHRSYLARK ERFFAMQLTR DLIGCHVFPV HRLDRPTSGV LLFAKSSEVA
RNLCEQFAEH KIKKDYLALV RGNMHEAGLL DYPLRVELDD VADKHAKADK PAQEAQTSYQ
PLLNSEIPFS SGRYPTSRFA LIKLSPHTGR KHQLRRHMAH LRHPILGDTT HGDGKQNKFS
REHFGVNRLW LIAKRLSFTH PVTGKPMTIE TQIEQQWLAT FALLGWTDAQ LQQLDFIQ
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