| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1532 |
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| Symbol | |
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| ID | 4018005 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 1780435 |
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| End bp | 1784787 |
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| Gene Length | 4353 bp |
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| Protein Length | 1450 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 637955542 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_562540 |
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| Protein GI | 91792889 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCATCT CACGTATTGC GACATTTTTT ACCGCTTTTT TCCTCAGCTG TGCTTTTTTC
CCAACAGCTC CAGCCTTGGC CTTTGAAACA GTTGTGGAAC CAGTGCCTGG CTCTGCTGCA
CAAACCTCAA CCCAAGACCA ACCTGAGTCC AATTTTTGGC TGCAAAACCG CAACGAATTT
GATATCGAGC TCAATTACGA CAGCTACAGC GTCGCCGAAG GACTTTCACA AAGTATCGTC
ACTAGCATAG TCGAAGATAG AGAAGGCTAC GTCTGGATAG GTACACTCAA TGGCTTAAAC
CGCTTCGATG GTACCCATTT CAAACACTTC TTCGCCGATG ATACCGGTTC TGGCCTGCCA
AGCTCCTTTA TAAGAAGCCT TGCTTTAGAC CCTGAGGGCA GATTATTAGT AGGAACCGAT
GCCGGACTAG TTCACTATAA TACTGAACTA GAGTCATTTT CAAAAGTCCC TCATCTACCA
AATAATTTAT CTCAAGCGAT ATGGGCACTG GAGTCAATAA ATGAAAGTTT ATTTATAGGG
TTGAAAAATA AAATAATAAT CTCAAACAAC CAGAAAGATA TATTTATCGA GTCTAAAAAA
CTTAAGGAAG TAAAAAAAAT AAGAGCATTC AGAAATGATA CTTTCATAAG AAATTATGAA
GGAGAAGTAT TTCTACACAG TAATGGAAAG TTAACAAAGA TATCACCTAG CAGCTATGAC
ATTGAGATTA TTAATGACGA ATTATTCATA GCATCAAAAG CTGGGTTGTA CACCTACAAG
AAAAAGAACA TCAAAAAAAT ATCAAACTCA ATTTACACAA ACATAACTAA ACATTCAAAT
GAAATAGTTG CACTAGCCGG GAATGACATT TACATCATAT CTAATACTTA CATAGAAAAA
CTTATTGGAA CAATAAAAAA AACTAACGAA GACTTCGAAA GGCTTTTCTT AAAAATAATA
AATGAAGATA TATTTATTAG CATAATGAAC GCAGGATTTA ACCACATAAC ACAGAAAAAA
AATCTGGTAA TTAGCCCAAA AAACATTAAT GGGAATGTTT GGTCTATAGC CAAAGGAAAC
GACGCTATAT ACATAGCGAC AGATTCCAGC GTCATAAAAG CTTACACGAA AAATTTAGAT
TTTATTACGA ATATATCCAC AAATGCTTCT GAAGGACCAA AAACAATAGC TATTTATAAA
AGAAATCTCT ATGTCGGCTC TCCGTCTGGA CTAATAACAA ATGACTTATC AAAAAACATT
ACACAAAGCT TATCATCCGA GCATATTTCT CACATCCTAG TTTACAATGA ACAAATTATT
GCAGGCACTG CTTCTGGGAG CATTATATTT TTAAATGAGA ATAATGAAAT AACAAATAAA
TATATCCCAA AGGAAAAGTA TCCGATATAC GATTTATTTA TGCAAGAAGG GACACTATGG
ATAGCCTCCC AAAATGGATT GAAAAAGTTA TCAAATATGA AAGAAGAAAT TATATACGAC
AAAGACATTG TTACCAGTAT AAAAAAAACA AATAACTCTT TCATATTTAG CACAAGAACA
TCTGTTTTTA CTTTTGATGA CGAAAAATCT GAAATAAAAG AGATTTATTC TGGTAGAAAA
CTTATTTACT CCAGTGCGGT CAGCGAAAAC AAAATTATTA TTTCATCAAA CGGAAAGATA
AGCATTATTG ATATTTCAAA AAACAAAACG ACCGATTTAC TAGTTCAGCA TGGCTCCCAG
ATAGATTACA ACGTAAATTC AGTTATAGAG CTGGGTGAGG ATATTTTTTT TGGCGGTTCA
AATGGGCTTA GCATCATTAA TGATAAAATA ATTTCTTCAT TCTTAAACAA AAACAAAAAA
AACAACATAG CCATTACGGA CCTATCAATA TTCAACACCA TTGAAAACAT TGGCGGATTA
ACATTAACAA AATCCATCAA CGATTTAAGA TATATTACTT TGAAATTCTC TGACTATCCT
TTTTCTTTCA AATTTATTGT GCCTGGGAAA GATTTAAACG ATGTCAGTTT TTACTATCAA
ATGAAAGGTC TGTCCAATGA TTGGCTTATT GCAAAAGAAG TTAACTCCGC TACTTATACT
AACTTATCTC ATGGCGAATA TTTTTTTAAC GTCTATGCCA TTGATAAATT AACGGGCCAG
CGAGGCCCTA CCAAATCCAT TAAAGTCATT ATTACCCCCC CTTGGTGGTT ATCTGTCGAA
GCCAAATTAA TCTATGCCCT TCTTACCTTG CTATTTTCCA GCGCTTTAGT CAGAGCAATA
ATGCGTCGCA GAGTCATTCA GAAGCAGATA GCCTTGAGCG AAGAACGGCT AAAATTATCA
CTTTGGGGCA GCGGCGATGA AATGTGGGAT TGGGACATAG AATCAGGCAA AATTTATCGC
TCTAACATCT GGGGCACCTT GGAGTTTCCT CAAGATGGCC AAAGATCTGG AGACGTCGAT
GGCGAAAGCA ATATTCACCC TCAAGATCAA GCTCGAGTGC AGCAGGCTTT AGATGACCAC
TTTGAAGGAG AAACAGACCA TTTTGAAGTC GCCTATCGCG TTAAAAATAG AAATAATGAA
TGGCTGTGGA TTTTAGATAG GGCTAAAATT GTTGAGCGAG ACAACAAAGA ACGCCCGCTA
CGAATGACGG GGACCATCAA AGATATCAAT AATATCAAGC AAACAGAAGA GCAGCTGAGG
CTATTTGCCA GAGCCATTGA AAACATCTCC GAAGGCATGT TTATATTGGA CGCAGAACAT
AGGTTTTTGG AAGTCAATTC CGCTTGTTGC AGCCTGCTAC AAAGAACAAA ATCATCATTT
ACCGGTGAGC TGCTGTCATT TAATCTCTAT CCTGAGTCAT TTTCAACTCA AATTCGCAGT
ATTATAACTC AGCAAGGCTA TTGGAGCGGC GACGTCGACG CCTTAAAGAG CGATGACTCA
ACATTTCTTA TGTCACTGAC TATCGATGCC ATTAAGGACG AATTAGGGCT GTTCAGCCAT
TATGTGGGTA TATTTTCAGA TATCACCCGC AGAAAACAGC AAGAAGAGGA ACTAAGAAAA
CTCACCAATA ACGACATTTT AACAGGCCTT GCTAACCGCT CCAGTTTGCA AGTAACTTTA
AGCAATCTCG TCAAAAAAGA CATACATCAT ACCTTGATGG TATTAGATCT TGATAATTTT
AAGCGTATCA ATGACTCATT AGGTCACCAA ATAGGTGATA GCTTAATTAT CAGTGTTGCT
GAGCGTATCC AAGCAATCAT TCCTTCCCAT GCAAGCCTTT ACCGACTCGG TGGTGATGAG
TTTGCTATTT TACTGGATAA AAATCCTGAT ATAGCCTCCA GTGCAGCCAT AGCAGGAAGC
GTCATCAAGG ATCTTAAAAC GCCATTTTCA ATTGAATCAG AACAATTGGT CATTGGTATA
AGTATTGGCA TAGTACTTTA TCCAGAGGAT GAGCAAAATG AACAAGCCCT TCTTAGAAAA
GCTGACATTG CCATGTACCA TGCTAAATCA GCAGGTGGCA ACCGATACCA GTTTTATGCC
GAATCACTTA ATCAAAACGT GTTAAGGCAA CTTGAAGTAG AAAATCTTAT TCGCCAAGGA
TTAAAAGAGG ACTTATTCGA AGTGCACTAC CAAGCTAAGG TGGATCTTAA GCTTGACAGA
ATTACAGGGA TGGAGGCTCT TGTCAGGCTA AATCATCCTC AGCTTGGCCT CATTCCCCCC
AATGATTTCA TCCCCCTTGC TGAAGACAAT GGCCTCATTA TCGAGATTGG CGATATTGTA
TTAAGAAAAG CCTGCACCGC AGCCCAAAGC TGGCGCCAAC AAGGGATATT TAATGGTCGC
ATCGCCGTCA ATTTATCGTC GAAACAATTT GCCTTGCCCG ACCTAGTGCA AAGAATTGAG
TCAATATTAT GTCAAACTGG TCTTCCTGCC GAAAACCTAG AGCTTGAAAT AACCGAAGGC
ACTGTTATTA AAAATCCTGA AAGTGCCATT AAAGTCATGC AACAGCTGGC TAAGATGGGT
ATTAGCCTAG CCTTGGATGA TTTTGGCACT GGCTATTCTT CACTGTCATA TTTGAAGCGC
TTCCCGATCC ACAGATTAAA AGTTGATAAG AGCTTTGTTG ATGATATCGA TAAGTCAGAC
ATGGATCTAA AAATGGTGGA TTCCATTATC ACTATCGCCC ATAACATGGG ACTCACTGTC
GTGGGAGAAG GGGTTGAGCA AGCCGCCCAA CTATCCATTC TGAAAGCACT AAATTGCGAG
GAAATTCAAG GGTATATTTT TAGCAAACCA ATTAAAGAAA GTGAATTCAC TCAACTATTG
GTAAACGATA TCAACAAGAA TCGGGTTGAA TAA
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| Protein sequence | MPISRIATFF TAFFLSCAFF PTAPALAFET VVEPVPGSAA QTSTQDQPES NFWLQNRNEF
DIELNYDSYS VAEGLSQSIV TSIVEDREGY VWIGTLNGLN RFDGTHFKHF FADDTGSGLP
SSFIRSLALD PEGRLLVGTD AGLVHYNTEL ESFSKVPHLP NNLSQAIWAL ESINESLFIG
LKNKIIISNN QKDIFIESKK LKEVKKIRAF RNDTFIRNYE GEVFLHSNGK LTKISPSSYD
IEIINDELFI ASKAGLYTYK KKNIKKISNS IYTNITKHSN EIVALAGNDI YIISNTYIEK
LIGTIKKTNE DFERLFLKII NEDIFISIMN AGFNHITQKK NLVISPKNIN GNVWSIAKGN
DAIYIATDSS VIKAYTKNLD FITNISTNAS EGPKTIAIYK RNLYVGSPSG LITNDLSKNI
TQSLSSEHIS HILVYNEQII AGTASGSIIF LNENNEITNK YIPKEKYPIY DLFMQEGTLW
IASQNGLKKL SNMKEEIIYD KDIVTSIKKT NNSFIFSTRT SVFTFDDEKS EIKEIYSGRK
LIYSSAVSEN KIIISSNGKI SIIDISKNKT TDLLVQHGSQ IDYNVNSVIE LGEDIFFGGS
NGLSIINDKI ISSFLNKNKK NNIAITDLSI FNTIENIGGL TLTKSINDLR YITLKFSDYP
FSFKFIVPGK DLNDVSFYYQ MKGLSNDWLI AKEVNSATYT NLSHGEYFFN VYAIDKLTGQ
RGPTKSIKVI ITPPWWLSVE AKLIYALLTL LFSSALVRAI MRRRVIQKQI ALSEERLKLS
LWGSGDEMWD WDIESGKIYR SNIWGTLEFP QDGQRSGDVD GESNIHPQDQ ARVQQALDDH
FEGETDHFEV AYRVKNRNNE WLWILDRAKI VERDNKERPL RMTGTIKDIN NIKQTEEQLR
LFARAIENIS EGMFILDAEH RFLEVNSACC SLLQRTKSSF TGELLSFNLY PESFSTQIRS
IITQQGYWSG DVDALKSDDS TFLMSLTIDA IKDELGLFSH YVGIFSDITR RKQQEEELRK
LTNNDILTGL ANRSSLQVTL SNLVKKDIHH TLMVLDLDNF KRINDSLGHQ IGDSLIISVA
ERIQAIIPSH ASLYRLGGDE FAILLDKNPD IASSAAIAGS VIKDLKTPFS IESEQLVIGI
SIGIVLYPED EQNEQALLRK ADIAMYHAKS AGGNRYQFYA ESLNQNVLRQ LEVENLIRQG
LKEDLFEVHY QAKVDLKLDR ITGMEALVRL NHPQLGLIPP NDFIPLAEDN GLIIEIGDIV
LRKACTAAQS WRQQGIFNGR IAVNLSSKQF ALPDLVQRIE SILCQTGLPA ENLELEITEG
TVIKNPESAI KVMQQLAKMG ISLALDDFGT GYSSLSYLKR FPIHRLKVDK SFVDDIDKSD
MDLKMVDSII TIAHNMGLTV VGEGVEQAAQ LSILKALNCE EIQGYIFSKP IKESEFTQLL
VNDINKNRVE
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