| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1481 |
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| Symbol | |
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| ID | 4017718 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 1712131 |
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| End bp | 1714395 |
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| Gene Length | 2265 bp |
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| Protein Length | 754 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637955491 |
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| Product | FAD dependent oxidoreductase |
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| Protein accession | YP_562489 |
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| Protein GI | 91792838 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
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| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000425578 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCCTTCTT GTTATGAACA TTCAGCCCAA TCGCCCCGTC CGCTGTCGGT ATTGGCCGAG
TACTTCCCTA AGGGTTACTC TGTTTTTTAT AAAGCCAATA CAGAGACTTG CCCTGAGGCT
AACCAGTATA GCAAGGCTTT AGTGGATTTT TATACTCAAG AATTAAATCA AGCTGAAGAC
ACTAACCTCA CCTTAGGTCA AATGGGTCTA GGGGATGGCG TATCCCTGCT CTTGTTATGG
CAAAGTTTGC TCCAATGCCG TAAAAATAAC CCTGAACTAT CTAGATTAAA GGTTCATCTA
TTGATATTCG AGCCACATGC CATTAGCGCC TTGGAGCTTA AGCAATTATG GCAAGCCTTA
GGTTTATTTG ACGCAAACTC CCCTGTTGCC CCTCAAGCCG AGCAATTTAT TGCGGGGAAA
ATGGCACAGA TCAATGGCGC TCAGCGGTTC ATCTTAGAGC AAGGTCAGCT GCGCATCGAT
GTGCATTTTG GCGATCTGCA TTCAAACTTA ACGGAACTCA TGACCCCAGA GCACAGAGTG
ACTCACTGGC ACTGCCTGCC CCATATTGCC CATACTCAAA CCGAGTTTGC CGAGACGCAA
GCTAGTCAGC TTCAATTTAA CCAAGTGCAG TCTAATGCTA ATCAATTAAA TCAAGCCATT
TTGTGGCAGA TGGGCCGCTT AAGCCAAGAT AACGCCAGCT TGTATCTTGA TGGCGAAAAT
TTTAAGCCAT CGGCTAGTGA TAATAACGCC TTAACTGACT GCACGCTTAT CAAGATGGCG
ACACAGGCAG GTTTTTCACG TTATTCACCC AATCTCTTTC AGGCATCATC AGATAGCTGT
AATGCCATCC CCCTTGGGGA GCGCCGCGCC CTGCGTCAAC AACAAGAAAA TCGGCAGGCT
CACTGCCCTG TGCCCAATTC CCTGGGGGAG CGCCGCCAAG CGGTTAACAA CTCAGACAGT
ATCGCCATTA TTGGTGGCGG TATTGCCGGG GCATGCCTCG CCCTGTCCCT TGCCGAGCGC
GGTAAAGCCG TGACTCTCTA TTGCAAAGAC GACAAGCTTG GCGATGGCGC CACTGGTAAC
CGTCAAGGGG CGATTTATCC GCTACTGACC CCAGAAAATA GCCATTTAAG TCAATTTTTT
CAACAAGCGT TTCTGTTTAG TCGCCGCCGC TTATTAGCCC TGTTACATGA AGTCTACCCT
ATTGGCCATC AGCTCTGCGG TGTGTTGCAA ACGGGTTTTG ATGAGCGCAG TGAAGCTCGG
CTTGAAAAAA TCATTCAAGG TCAACACTGG CCTGAGGAAA TTGCTTATGC CGTCAGCCCA
GAACAAGCCA GTGCACTGGC AGGTGTCAGC ATAGATAAAC CAGGATTCTA CTACCCTAAC
GGCGGCTGGA TCTGCCCGTT CGAGTTCGCC CGTGCTTGCC TTGAAAAGGC CAAATCCTTA
GCCAATGTCG AGGTGAAGTT AAACAGCACT ATCAGTTGCA TCAAGCCGCT AGCCGCAAAC
GTTGACTCAA AGGACGCGAG TGGATGCACT TCACAAGCCT CTGGCACGCT ATGGGGCTTA
TATCATCAAG GTGAGATTGT GGGTTCGCAT CAACAAGTCG TGCTGGCAAG TGGCGCCAGC
ATTACCGCCT TTGAGCAGAC CCAAGCATTA CAAATGAGCG GTTTTCGCGG CCAGGTGAGT
CATGTCCCCA GCAAAGGCGA ACTGGCTAAG CTCAATACCG TTATTTGCGC CAATGGCTAC
TTAACCCCTG CATTTAACTC AACTCACTGC GTCGGCGCCA GTTATGTTAA AGATCCTGAG
CATCTGGACT TCTGCTCCGA TGAACAGGCA GAAAACGGCC AAAAAATGCA GCAAAGTTTT
CCAAACCTTG AGTGGCCACA GGATATCGAT GTCTCTGACA GGAATGCCAG AGTGGGCGTA
CGCATGGTCA CTCGCGATCA TTTTCCCATG ATGGGCTGCG CCCCGGATAT TGAAGAAATC
ATCAGTCGCT ATCAAACCCT GAATGCTAGC CCACAGGCGA GCCAAAACAA TTACGCTAAG
CAATGTCAGC AGTACTGGCA ACAGACTCCC GCACCGGTAC ACCACAACTT ATTTGTCTTG
GGAGGCTTGG GCTCACGGGG CTTAAGTTCA GCCCCCCTTG CGGCCGAGTG TTTAGCGGCG
CAATTATGTG GTGAGATTGC CCCTATTAGT GCTACCACCT TAGCGCTGCT CAACCCTAAT
CGTATGTGGA TGAGAAAGCT GCTAAAAGGT AAGGCATTGT GTTAG
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| Protein sequence | MPSCYEHSAQ SPRPLSVLAE YFPKGYSVFY KANTETCPEA NQYSKALVDF YTQELNQAED
TNLTLGQMGL GDGVSLLLLW QSLLQCRKNN PELSRLKVHL LIFEPHAISA LELKQLWQAL
GLFDANSPVA PQAEQFIAGK MAQINGAQRF ILEQGQLRID VHFGDLHSNL TELMTPEHRV
THWHCLPHIA HTQTEFAETQ ASQLQFNQVQ SNANQLNQAI LWQMGRLSQD NASLYLDGEN
FKPSASDNNA LTDCTLIKMA TQAGFSRYSP NLFQASSDSC NAIPLGERRA LRQQQENRQA
HCPVPNSLGE RRQAVNNSDS IAIIGGGIAG ACLALSLAER GKAVTLYCKD DKLGDGATGN
RQGAIYPLLT PENSHLSQFF QQAFLFSRRR LLALLHEVYP IGHQLCGVLQ TGFDERSEAR
LEKIIQGQHW PEEIAYAVSP EQASALAGVS IDKPGFYYPN GGWICPFEFA RACLEKAKSL
ANVEVKLNST ISCIKPLAAN VDSKDASGCT SQASGTLWGL YHQGEIVGSH QQVVLASGAS
ITAFEQTQAL QMSGFRGQVS HVPSKGELAK LNTVICANGY LTPAFNSTHC VGASYVKDPE
HLDFCSDEQA ENGQKMQQSF PNLEWPQDID VSDRNARVGV RMVTRDHFPM MGCAPDIEEI
ISRYQTLNAS PQASQNNYAK QCQQYWQQTP APVHHNLFVL GGLGSRGLSS APLAAECLAA
QLCGEIAPIS ATTLALLNPN RMWMRKLLKG KALC
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