| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1455 |
|---|
| Symbol | |
|---|
| ID | 4017764 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 1691036 |
|---|
| End bp | 1691815 |
|---|
| Gene Length | 780 bp |
|---|
| Protein Length | 259 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637955465 |
|---|
| Product | RNA methyltransferase TrmH, group 1 |
|---|
| Protein accession | YP_562463 |
|---|
| Protein GI | 91792812 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0565] rRNA methylase |
|---|
| TIGRFAM ID | [TIGR00050] RNA methyltransferase, TrmH family, group 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.000119002 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAGTA ATATACGTGT CGTTTTAGTT GGAACATCTC ACCCTGGAAA CATAGGCTCT
ACTGCCAGAG CGATGAAAAC AATGGGGTTA TCAAACTTAT ACCTTGCTGA GCCTAAGGTT
GAACCCGATG GTCAATCCAT TGCGTTATCG GCGGGTGCGA GCGACATTTT AAAACATTTA
ACTCGGGTAG ACTCCCTAGC CGAAGCCATT GCAGATTGTA GCTTAGTGAT TGCCACTAGC
GCGCGCAGTC GCACCTTAGA TTGGCCTATG CTTGATCCAA GAGAAGCGGG CATTAAATTA
ACTGCCGAAG CACTAAATGG CCCTGTTGCT ATCGTGTTTG GCCGTGAAAA TAATGGCTTG
AGCAATGAAG AGTTACAAAG CTGTCAATTT CATGTGGCGA TCCCTGCCAA TCCAGAATAC
AGTTCATTGA ATTTAGCTCA AGCGGTGCAG ATTATCTGTT ATGAAGCCCG TGTCGCGCAC
TTGGCTCAAT TAGCGAAAAT GGATGACTCT GAAGCTGCGC CACAAGCGGC TGCAATCGTA
GAAGCAGAAA CTGCCCCTGA AGAGCCACAA GCTTATCCAT TATCGGCAGA TCTTGAGCGC
TTCTACACAC ATCTAGAGTC GACGTTGTTA GCCACAGGTT TTGTGATTAA AAACCACCCA
GGCCAAATCA TGATGAAATT GAGACGTCTG TTTAGTCGAG CTCGGGTTGA AGAGCAAGAG
ATGAATATCC TTCGCGGGAT CTTAACTTCT ATTGATAAAA AAATACCGCC AAAAGAGTAA
|
|---|
| Protein sequence | MLSNIRVVLV GTSHPGNIGS TARAMKTMGL SNLYLAEPKV EPDGQSIALS AGASDILKHL
TRVDSLAEAI ADCSLVIATS ARSRTLDWPM LDPREAGIKL TAEALNGPVA IVFGRENNGL
SNEELQSCQF HVAIPANPEY SSLNLAQAVQ IICYEARVAH LAQLAKMDDS EAAPQAAAIV
EAETAPEEPQ AYPLSADLER FYTHLESTLL ATGFVIKNHP GQIMMKLRRL FSRARVEEQE
MNILRGILTS IDKKIPPKE
|
|---|
| |