| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1418 |
|---|
| Symbol | |
|---|
| ID | 4017443 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 1654172 |
|---|
| End bp | 1655173 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637955426 |
|---|
| Product | patatin |
|---|
| Protein accession | YP_562427 |
|---|
| Protein GI | 91792776 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1752] Predicted esterase of the alpha-beta hydrolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.84629 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACTGA TTATTACTAA AAAGGCCGCA GATCTCCCTA AGCCTAAAAA ACCTGTTATT
GGCCTCGCTT TAGGCAGTGG GGCGGCTAAA GGCTGGGCAC ATATCGGTGT GCTTAATGGC
CTAGCCAAAC TCGGTATTTT TCCTGACAAG GTGGCAGGTT GCTCTGTGGG GGCGCTCGTG
GGGGCGGCTT ATGCCAATGA CAATCTCGAT GAAATTGAGA AGTGGGTGCG CGGGTTTTCC
AGTTGGGACG TGCTGGGTTT GATGGATATA CGTTGGCGTA AGGGCGGTAT CATCAATGGT
GAAAAAGTCT TTGAAGTGCT ATCAAGCCGA GTTGGTGCTT TAAAAATTGA GCAACTAAAG
CGTGCATTTG CTGCTGTGGC TACGGATCTC TATTCGGGGC AAGAAATTTG GTTTCGAGAA
GGGGACTTGC GCCATGCGGT AAGGGCGTCT TGTTCTATGC CAGGCTTTTT ACCTCCAGTG
CAACAAGATG ATCGCTGGCT GGTGGACGGC GCTGTGGTGA ACCCGGTACC TGTGTCCTTG
TGCCGGGCCA TGGGAGTGGA CTTAGTGATA GCCGTTGATC TTAATGGTCA CCGCCGTGGT
CAGATGATGA TGTTGCCAGA ACAAGTGGTC AGCCACCAAG CTGAAAAGTC TCAAACTGTG
ACTGAAAAGC CTCAGCTAGA GTCCGGCTTC ATGGATCTTT GGGGCAAGAG TAAAGAATAC
TTAAGCGGCC TGACTGAAAA GTTTTCTCTA GGGGTTAATT CCCATCCTGG CATGTTGGCA
GTGATGTCTC AATCCATGGA CATATTAGAG CAGCGCCACA AACGGGCGCG CTTAATGGGC
GATCCGCCGG ACATTTGCAT CGTTCCCCAA GTGTTCGATA TCGGCACTAT GGAGTTTCAC
CGTGCAGCAG AAGCCATAGC GGCAGGAGAG CAAGCGGTTG AGAACATCAG CCATTTACTC
AAGGCGAGCA TAGGTGATTT TGATTCGGCG CCGCAAAGAT AA
|
|---|
| Protein sequence | MALIITKKAA DLPKPKKPVI GLALGSGAAK GWAHIGVLNG LAKLGIFPDK VAGCSVGALV
GAAYANDNLD EIEKWVRGFS SWDVLGLMDI RWRKGGIING EKVFEVLSSR VGALKIEQLK
RAFAAVATDL YSGQEIWFRE GDLRHAVRAS CSMPGFLPPV QQDDRWLVDG AVVNPVPVSL
CRAMGVDLVI AVDLNGHRRG QMMMLPEQVV SHQAEKSQTV TEKPQLESGF MDLWGKSKEY
LSGLTEKFSL GVNSHPGMLA VMSQSMDILE QRHKRARLMG DPPDICIVPQ VFDIGTMEFH
RAAEAIAAGE QAVENISHLL KASIGDFDSA PQR
|
|---|
| |