| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1413 |
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| Symbol | |
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| ID | 4017438 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 1648044 |
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| End bp | 1649186 |
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| Gene Length | 1143 bp |
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| Protein Length | 380 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637955421 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_562422 |
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| Protein GI | 91792771 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000000766158 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAACGC AAACAAGCTC AACACTTAAG GTCACATTGT CACGAACAAA GACTATGAGT
GCCCTGTCAC TGCTTGGCAT TGCAATGCTA GCCCTATTAA TATTCAGCAT ACCGCTCACT
GTGCTGGCAC AATCCCCTGA GACAAAACTT GCCAGTGTCG AGGTTAAGAC CAGCCGCATT
CCACAATACA TAGAGCTCGA TGCCAGAGTT GAAGCCGGCC AGGCTGCCAC AGTCGCAGCC
CAGACCTCAG GTCGGATTTT AACCTTATAT TATGATGTGA ATGATTTAGT TTCAGTAGGG
TCACCTTTGC TGGAAATCAC CAGTAAAGCC CAAAGCGCAG AGCTTGCAGG CGCCGAGGCC
GAACTTGCCA AGGCCATGGC CATTAATCAG CAAGCCCAAG CCCAATATCA GCGGGTAAGT
ACGCTTTTCC CTCAAGGGGC GATTGCTCAA GGGGCGATGG ATGAAGCCCG CGCCACGGCC
AAAACCAGTG AACAAGCCAT TAGCGCAGCC AAGGCAAATC TCATCAAAGC CAAGCAAACC
TTAGATTACA CCGTAGTCAG CGCCCCCTTC AGTGGCCGCG TCAGTGAGAG GCATGTGCAG
CAAGGGGAAA CTGTCTCCTT GGGACAAGCC TTATTTTCAG GCTACGATCC AACGTCGCTG
CGACTGGTAA CCCATTTATC CCAGCGCCTG TATTCAAGGC TCATTCCCGA TGCCAAGGGC
CAGTTCAGCA CATATTTCAA TCAAACCAAC TTTACATTTG AGCAAGTCAC AGTGATGGCA
TTTTCCGAGC CATCCAGTCA CAGTCACCAA GTCAGAATAA GCTTAGAGAA CCAGCCTCAA
TTGATGGAGC AACTCGTTCC AGGTCAATGG CTTAAAGTAC GTTTCATGGA CGAGTACACT
GAAGGCTTGT TGATCCCTAA GAGCGCTTTA GTCAAGCAAG GTGAGTTTAC TGGCGTCTAC
CGGCTCCAAG GCGCAGATAT TCACTTGACT CAAGTGCGTG TCACTAAGGA ATACGGTGAG
CAATTGCAGG TTGTTTCGGG TCTAATTTCA GGCGATACCA TAGCGCTAGA TGCTCAATTG
GCCCATGCCG CTTTGATTAA ACCGAACCAT GGGGCAAGTC AGTCTTCAGT GGAGGGCAAC
TAA
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| Protein sequence | MQTQTSSTLK VTLSRTKTMS ALSLLGIAML ALLIFSIPLT VLAQSPETKL ASVEVKTSRI
PQYIELDARV EAGQAATVAA QTSGRILTLY YDVNDLVSVG SPLLEITSKA QSAELAGAEA
ELAKAMAINQ QAQAQYQRVS TLFPQGAIAQ GAMDEARATA KTSEQAISAA KANLIKAKQT
LDYTVVSAPF SGRVSERHVQ QGETVSLGQA LFSGYDPTSL RLVTHLSQRL YSRLIPDAKG
QFSTYFNQTN FTFEQVTVMA FSEPSSHSHQ VRISLENQPQ LMEQLVPGQW LKVRFMDEYT
EGLLIPKSAL VKQGEFTGVY RLQGADIHLT QVRVTKEYGE QLQVVSGLIS GDTIALDAQL
AHAALIKPNH GASQSSVEGN
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