Gene Sden_1407 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_1407 
Symbol 
ID4017344 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp1639087 
End bp1640010 
Gene Length924 bp 
Protein Length307 aa 
Translation table11 
GC content49% 
IMG OID637955415 
Productsiroheme synthase 
Protein accessionYP_562416 
Protein GI91792765 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG1648] Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) 
TIGRFAM ID[TIGR01470] siroheme synthase, N-terminal domain 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.117036 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGTATT TTCCGCTATT TGTCGATACC CAGGCACTGT CTGTGCTGAT TGTTGGTGCG 
GGAGAGGTCG CTAGTAGAAA ACTGGCTTTA CTTGCCAGAA CCGACGCGCG TATTCAGGTT
TTGGCGCCAG CAACCACGGC CGAAGTGGAT GAATTTGAGG CTGAAGGGCG GATCGCACTG
GAGCGCCGTC CAGCGACACT TGAGGACATG CAGGGATTCG ATCTTATCTA TCTTGCTACC
GCGAACGAAC AGCTTAATAT TGACCTTGCA GAGGCAGCCA CACAAGCCGG TATTTGGTGC
AATGTGGTGG ATAATCCTAA ATATTGCCGC TTTATCACCC CCTCCATCAT AGACAGGGGC
CGCTTGGTGG TGGCTATTAG CACCGCAGGC GCAGCGCCCG TATTCGCTAG AAGTTTACGA
GCACGGCTTG AATCTTGGCT ACCGCAATCT TTATCTCCAT TATTTGATTT TGTGGCTCAG
CGCCGTGATG AAGTGCAGCA AAATGTTGCG GCTCCTAAGT CGAGACGTTT GTTGTGGGAG
CACTTTTTTG ACCTTAATGG CGACAAGTGG GATAACGATA CCCCAACGCA TTTCCAGCAA
GCGATGACGT TAGCCCAAGA CAACAGCCAG CGACAGGGAC GACTATTGTT ACTCGATAGT
TGCATAGAGG CGCAATGGCT ACCATTGGCT GTGATGCCGC TGTTTTCTCA GCTTGATTGT
ATCTATTCCG ACTTATCCAT ACCCTTTAAA ATTAATGAAC TGCTAAGGCG TGATGCCAAT
CGAGCGGGGA TTCCTCACTT TACCCAGTTA ACAGGGCGCT TAGCTCAAGG TGAACGCATG
CTAATTTTTG CCAATCCCGT TGAGATTGCA GCCTTACAAG ACCAATTTCC TCAAGCTCAA
TCTATTAAGC CGGGTTCATT ATAG
 
Protein sequence
MQYFPLFVDT QALSVLIVGA GEVASRKLAL LARTDARIQV LAPATTAEVD EFEAEGRIAL 
ERRPATLEDM QGFDLIYLAT ANEQLNIDLA EAATQAGIWC NVVDNPKYCR FITPSIIDRG
RLVVAISTAG AAPVFARSLR ARLESWLPQS LSPLFDFVAQ RRDEVQQNVA APKSRRLLWE
HFFDLNGDKW DNDTPTHFQQ AMTLAQDNSQ RQGRLLLLDS CIEAQWLPLA VMPLFSQLDC
IYSDLSIPFK INELLRRDAN RAGIPHFTQL TGRLAQGERM LIFANPVEIA ALQDQFPQAQ
SIKPGSL