Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_1403 |
Symbol | secD |
ID | 4017340 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 1635306 |
End bp | 1637156 |
Gene Length | 1851 bp |
Protein Length | 616 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637955411 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_562412 |
Protein GI | 91792761 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00249908 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTTAAATA AATACCCAAT GTGGAAGAAC ATCATGGTGA TGCTTGTCAT CGCTGTTGGT GCTTTTTATG CGATCCCAAA CCTATTCGGT GAAGATCATG CAGTTCAAGT TGTTGCCACT CGCGGCGCAG AAGTCACGAC TTCGACCCAA ACGAGTGTCA TCGAATTACT CGAGAGCAAA GGCATTGCGG TAAAGCGCGC TGAGCTCACA AATGGTCAGT TGCTGGTTCG TGTGCAGAAT GGCGAGCAGC AACTAACGGC TAAAGAGGCC ATTGCAGACA GTCTAGGCAA TAAGTTCACT GTCGCATTAA ACCTAGCGCC AGCAACCCCT GAGTGGCTAG AAGCCCTTGG TGGTAGCCCA ATGAAGCTAG GGCTAGATTT ACGTGGCGGC GTGCATTTCC TGATGGAAGT GGATATGAGC GAAGCTGTTC GTAAAATGGA AGAGGCAAAG ATTGCCGATT TCCGTAGTCA ATTACGTGAA GAAAAAATTC GCTATGCCGG TGTGCGTAAG ACACCTAAAG GCATAGAAAT TAAGTTCCGT GATGCCGACA CTGTGGCGAA AGCCGAAGCT TATTTGAAGA CTCGCGGCAA TGACATGACA TTTGCCGATG CCAGTGAAGG CGACAACTTC GTGCTCCGTG CCAACATGAG CGAAGTTTAC GTCAAGCAAA TTAAAGAAGA AGCGCTGCAG CAAAACATCA TCACCATTCG TAATCGTGTC AACGAATTGG GTGTTGCTGA ACCTGTGGTG CAGCGTCAGG GCGCCGAGCG CATTATTGTT GAGTTGCCAG GTGTACAGGA TACGGCTCGC GCCAAGGAAA TCTTAGGTGC AACCGCATCG ATTGAATTCC ATATGCTCGA TGATAAAGCC GATCCAAGTG CAGCGGCCAG TGGCCGGGTG CCAGCGGGTT CTCAAGTCTA TCCTCGCCGC GAAGGCGGTA TTGCTGTGCT TAAGAAAGAA ATCATGCTTA CGGGTAATCA TATTACCGGT GCTCAGCCTT CTTTTGATGA ATACAGTCGT CCACAGGTGT CGATTAACTT AGATGCGCAG GGAGGAAATA TCTTCTCTAA CGTGACTAAG GACAATATCG GTAAACCAAT GGCAACGCTG TTTATCGAAT ACAAAGACAG TGGTCTGCGA AACCCCAATG GCACAGTGAA AATGACCAAG ATTGAAGAGG TTATTTCTGT GGCCACCATT CAGGCGCGCC TTGGTCGTAA CTTTGTGATT AACGGCCTTG AACATGCTGA ATCGCAAAAT TTAGCCTTGT TATTACGTGC AGGTGCTTTG ATTGCCCCTG TGACTATCGT TGAAGAACGC ACCATAGGCC CAAGCCTTGG CGCTGAGAAC ATCCAAAACG GCATGCAAGC CATGATTTGG GGTCTTGCGA TCGTTCTGAT ATTTATGATG ATCTACTACC GTGCATTTGG CATCATTGCG AACATTGCAT TGCTAGCCAA CATCATCATG GTTGTGGGCG TCATGTCTAT GATCCCAGGT GCGGTATTAA CCTTACCCGG TATTGCCGGT ATGGTATTGA CAGTCGGTAT GGCCGTTGAT GGTAACGTTT TGATTTATGA GCGTATTCGT GAAGAAATCT TAGCGGGACG CAGTGTGCAA CAAGCGATTC ATGAAGGCTA TGCGAATGCG TTATCGACTA TTGCCGATGC CAACATCACA ACATTTATGA CTGCACTTAT TATGTTTGCT GTGGGCACCG GCGCCGTTAA AGGTTTCGCC GTGACCCTGA TGATAGGTAT CGCGACCTCA ATGTTTACCG CTATCGTCGG AACACGTTCA ATCGTGAACG CCGTTTGGGG TGGTAAACGT GTTAAGAAGC TATCTATCTA G
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Protein sequence | MLNKYPMWKN IMVMLVIAVG AFYAIPNLFG EDHAVQVVAT RGAEVTTSTQ TSVIELLESK GIAVKRAELT NGQLLVRVQN GEQQLTAKEA IADSLGNKFT VALNLAPATP EWLEALGGSP MKLGLDLRGG VHFLMEVDMS EAVRKMEEAK IADFRSQLRE EKIRYAGVRK TPKGIEIKFR DADTVAKAEA YLKTRGNDMT FADASEGDNF VLRANMSEVY VKQIKEEALQ QNIITIRNRV NELGVAEPVV QRQGAERIIV ELPGVQDTAR AKEILGATAS IEFHMLDDKA DPSAAASGRV PAGSQVYPRR EGGIAVLKKE IMLTGNHITG AQPSFDEYSR PQVSINLDAQ GGNIFSNVTK DNIGKPMATL FIEYKDSGLR NPNGTVKMTK IEEVISVATI QARLGRNFVI NGLEHAESQN LALLLRAGAL IAPVTIVEER TIGPSLGAEN IQNGMQAMIW GLAIVLIFMM IYYRAFGIIA NIALLANIIM VVGVMSMIPG AVLTLPGIAG MVLTVGMAVD GNVLIYERIR EEILAGRSVQ QAIHEGYANA LSTIADANIT TFMTALIMFA VGTGAVKGFA VTLMIGIATS MFTAIVGTRS IVNAVWGGKR VKKLSI
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