Gene Sden_1401 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_1401 
Symboltgt 
ID4017338 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp1633803 
End bp1634936 
Gene Length1134 bp 
Protein Length377 aa 
Translation table11 
GC content47% 
IMG OID637955409 
Productqueuine tRNA-ribosyltransferase 
Protein accessionYP_562410 
Protein GI91792759 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0343] Queuine/archaeosine tRNA-ribosyltransferase 
TIGRFAM ID[TIGR00449] tRNA-guanine transglycosylases, various specificities
[TIGR00430] tRNA-guanine transglycosylase, queuosine-34-forming 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value3.97481e-08 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAATTTG AATTAGATAC AACCCAAGGC CGTGCCCGTC GTGGTCGCCT GATTTTTGAC 
CGTGGCACAG TTGAAACCCC GGCATTTATG CCAGTGGGCA CTTACGGCAC AGTGAAAGGC
ATGACCCCAG AAGAAGTACG CGCCACAGGT GCAGACATTT TATTGGGCAA CACTTTCCAT
TTATGGCTGC GCCCAGGCGA AGAAATCATG CGTAAGCACG GTGACTTGCA CGACTTTATG
AACTGGCAGC GCCCCATATT GACAGACTCT GGCGGTTTTC AAGTGTTTAG CCTTGGGGAC
ATACGTAAGA TCACCGAAGA AGGCGTGCAC TTTCGCTCAC CTATCAATGG TGAGAAGATT
TTCCTAGACC CAGAAAAGTC AATGCAAATT CAGGATTCAC TTGGCTCAGA TGTGGTGATG
ATTTTTGATG AATGCACCCC ATACCCAGCC ACAGAAGATG AAGCACGTAA GTCAATGCAA
ATGTCATTGC GTTGGGCGCA ACGTTCTCGT GATGAGTTTG ACCGTTTAGA AAATCCAAAT
GCATTGTTTG GCATTATTCA AGGCGGCGTT TATGAAGACT TACGTGACGA AAGTCTAACT
GGCTTAGTTA ACATTGGCTT TGACGGTTAT GCTATCGGCG GCTTAGCCGT AGGCGAGCCT
AAGCCTGACA TGCACCGTAT TCTTGAACAT GTGTGTCCGC AAATTCCAGC AGATAAGCCA
CGTTATTTAA TGGGCGTGGG TAAACCTGAA GATTTGGTGG AAGGTGTGCG CCGCGGCGTC
GATATGTTTG ACTGCGTGAT GCCTACCCGT AATGCCCGCA ATGGTCATCT GTTTACCAGC
GAAGGGGTGA TTAAAATCCG TAATGCTCGC CACAGGGATG ACACGGCGCC ATTGGATGAA
AAGTGTGATT GTTACACCTG TAAGAACTAC TCACGGGCGT ACTTGTATCA CTTAGATCGT
TGTAATGAAA TTTTAGGTGC GCGTTTAAAC ACCATCCACA ATCTACGTTA TTACCAAATG
TTGATGGAAG GTTTGCGCGG CGCTATTGAG ACGGGTACAT TAGACGCCTT TGTAAGTGAC
TTCTATACCG GCTTAGGGCG CGAAGTACCT GAAGTACCAG AGTTAGTTGA TTAA
 
Protein sequence
MKFELDTTQG RARRGRLIFD RGTVETPAFM PVGTYGTVKG MTPEEVRATG ADILLGNTFH 
LWLRPGEEIM RKHGDLHDFM NWQRPILTDS GGFQVFSLGD IRKITEEGVH FRSPINGEKI
FLDPEKSMQI QDSLGSDVVM IFDECTPYPA TEDEARKSMQ MSLRWAQRSR DEFDRLENPN
ALFGIIQGGV YEDLRDESLT GLVNIGFDGY AIGGLAVGEP KPDMHRILEH VCPQIPADKP
RYLMGVGKPE DLVEGVRRGV DMFDCVMPTR NARNGHLFTS EGVIKIRNAR HRDDTAPLDE
KCDCYTCKNY SRAYLYHLDR CNEILGARLN TIHNLRYYQM LMEGLRGAIE TGTLDAFVSD
FYTGLGREVP EVPELVD