Gene Sden_1394 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_1394 
SymboltolB 
ID4017357 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp1624669 
End bp1625997 
Gene Length1329 bp 
Protein Length442 aa 
Translation table11 
GC content46% 
IMG OID637955396 
Producttranslocation protein TolB 
Protein accessionYP_562403 
Protein GI91792752 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0823] Periplasmic component of the Tol biopolymer transport system 
TIGRFAM ID[TIGR02800] tol-pal system beta propeller repeat protein TolB 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value2.03609e-10 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGATTT TGGCTAAATG GTTAACCTTA GCGACGCTAA TGTTAACGGC ACAAGTAAAT 
GCAGCACTCG ATATCGTCAT CACTGAAGGT GTAGATGCTG CGCGCCCAAT CGCAGTCGTG
CCATTTGTGT GGGAAGGTCC AGGTGCTGCA CCGCAGCAAA TTTCTGATAT CGTTATGGGC
GACTTAAGCC GTAGCGGTAC CTTTAAACCG CTAGACATTC GTGCATTACC ACAACACGGT
ATTAGTTCAG TGGCGCAATT CGCCGCCGCT AGTTGGGGTA AAGTGGGGGC AGAAGCCGTA
GTCATGGGGT CTATTAAACC TTATGGCGTC GATCAGTTTT TAGTGAATTT TGAGCTGATC
GATTTAGTCA GAGCCCAAAG CCAAGCTTTA AAAGGACCGC AGAATAACAC AGAGCTTGTG
CTAGAAAGTC GTCAAACAGT CATTAGCGCG AATCAGTTTA GGCAATATGG TCACAGAATA
AGTGACATAG TGTATGAAAA GTTGACCGGC ATTCGTGGCG CATTCTTGAC CCGTACCGCT
TACGTCGTGG TTAAGCAAGG TCAAAAAGCC CCGTATCACT TGATGATTGC CGATTACGAT
GGCTATAACG AGCAGATGTT GTTGCGATCG CCAGAGCCTT TAATGTCGCC AACTTGGTCT
CCTGATGGGC GCCGTTTGGC CTATGTGAGC TTTGAAAACC GCAAAGCGGA AATCTTTGTT
CAAGACATTT ATAGCCAGAC TCGCACTTTA GTGAGTAGCT ATCCTGGAAT TAACGGCGCG
CCCAGTTTTT CACCAGATGG TAAAAAATTG GCTGTGACCT TGTCTAAAGA TGGTCAGCCA
GAAGTCTATG TTATCGACAT CGCCACTAAG GCGGCTAAAC GAATCACAGA TCACTATTCG
ATTGATACTG AGCCTTCTTG GTATCCAGAT GGTAAGTCAT TGTTATTCAC CTCTGAACGA
GGTGGCAAAC CACAGATTTA TAGCGTACAT TTGGACACAG GAAAAGTGTC TCGAGTGACA
TTTGAAGGTG AATGGAACTT AGGTGGTTCT ATCACACCAG ATGGTCGCAG TATGATTTTT
GTGAACCGTA CTAATGGAAA ATTCCACATT GCTAGAATGG ATTTAGCCAC ACGCTTTTTG
CAGGTGTTAT CGTCGACGCA ACTCGATGAA TCACCAAGTG TTGCTCCAAA TGGCACTATG
GTTATCTATG GTACGACTCA CCAAGGTAAG CAAGTTTTAG CTGCTGTCTC TATGGATGGC
AGATTTAAAG CAAGATTACC TGTCGGCCAA GGCGAGGTGA AGTCACCCGC ATGGTCTCCG
TTTCTCTAA
 
Protein sequence
MKILAKWLTL ATLMLTAQVN AALDIVITEG VDAARPIAVV PFVWEGPGAA PQQISDIVMG 
DLSRSGTFKP LDIRALPQHG ISSVAQFAAA SWGKVGAEAV VMGSIKPYGV DQFLVNFELI
DLVRAQSQAL KGPQNNTELV LESRQTVISA NQFRQYGHRI SDIVYEKLTG IRGAFLTRTA
YVVVKQGQKA PYHLMIADYD GYNEQMLLRS PEPLMSPTWS PDGRRLAYVS FENRKAEIFV
QDIYSQTRTL VSSYPGINGA PSFSPDGKKL AVTLSKDGQP EVYVIDIATK AAKRITDHYS
IDTEPSWYPD GKSLLFTSER GGKPQIYSVH LDTGKVSRVT FEGEWNLGGS ITPDGRSMIF
VNRTNGKFHI ARMDLATRFL QVLSSTQLDE SPSVAPNGTM VIYGTTHQGK QVLAAVSMDG
RFKARLPVGQ GEVKSPAWSP FL