| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1362 |
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| Symbol | |
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| ID | 4017609 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1582533 |
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| End bp | 1584554 |
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| Gene Length | 2022 bp |
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| Protein Length | 673 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637955359 |
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| Product | choline/carnitine/betaine transport |
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| Protein accession | YP_562371 |
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| Protein GI | 91792720 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.000623924 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCTTCA AGTCAAGTAT TAACCCCGCA GTGTTTTTCT CATCGGTAAT TTTAATTACC
CTTATGGTGT TTCTGTGTGC CCTTTGGCCA CAAGAGGCGA GTCATTTCTT TAAGTCAGTG
CAAGGCGGCT TAGAAGCAAA AGCGGGATGG TTGTATATTT TAGCCGTGGC CATTTTCTTG
TTGTTTATTT TGTTTGTGAT GATGAGCCGT TTTGGTGACA TTAAGCTTGG GCCAGATCAT
GCCGTGCCGG ATTACAGCTA TAAGAGCTGG ATAGCCATGC TGTTTTCTGC CGGTATGGGC
ATAGGTTTGA TGTTTTTTGG TGTGGCAGAG CCCGTGATGC ATTATTTAGC GCCGCCAGAT
GCGACGCCTG AGACCATTGC CGCGGCAAAA GATGCCATGC GGATCACGTT TTTCCATTGG
GGGCTCCATG CCTGGGCGAT TTATGCCGTG GTGGCCTTAA GCTTGGCGTA TTTCTCCTAT
CGGCATAAGT TGCCGCTATT ACCCCGCTCG TCTTTATATC CCCTGATAGG CGAGCGCATC
TATGGTCCCA TAGGTCATGC TGTCGACACC TTTGCCGTAT TAGGTACCAT GTTCGGCATC
GCCACTTCCC TAGGGTTTGG TGTGCTACAG GTCAACTCTG GCTTAAGTTA CTTGATTGAT
GGTTTTCCAA ATAATGCTTG GATGCAGGTG GGCTTGATTG CCATCATTAC CGCCATCGCG
ACCTTGTCTG TATTTTCAGG CTTAGACAAA GGGGTTAAGC GTTTAAGCGA GCTAAACCTA
GGTTTAGCTT GTCTCTTGAT GCTAGCTGTC TTATTACTTG GGCCAACCGT GGTCTTGTTG
CAAGCCTTCG TGCAGAACAC CGGCAGTTAC TTAAGTGAGT TAGTGGGTAA AACCTTCAAC
CTTTATGCCT ACCAACACAA GGAAGATTGG ATTGGTGGCT GGACCTTGCT CTACTGGGGC
TGGTGGATTT CATGGTCCCC TTTTGTGGGC ACCTTTATCG CAAAGGTCAG TCGTGGTCGC
ACCATTCGTG AGTTTCTCAT CGGGGTTTTG TTTGTTCCAA GCGCCATAAC TTTCCTGTGG
ATGACTGTTT TTGGCAATAG CGCCATCGAT GCCATCATGA ACCATGGGGC GAGTTATTTG
GCAGAGGCTG TGTCCACCGA CGTGTCAGTC GCCTTGTTCA AGTTTTTTGA ACACTTACCA
TTTTCTAATT TATTGTCCGT GATAGCCCTT TGTTTAGTGG TGACTTTCTT TGTGACGTCA
TCGGACTCAG GTTCTTTAGT GATAGATAAC CTCACTTCAG GCGGCGATGA TAATGCTCCT
GTGTGGCAGA GGATTTTTTG GGCGGTATTG GAAGGGGCGG TTGCAGCAGT ATTACTGCTG
GCAGGTGGTT TACAGGCCTT GCAAACGGCT GCTATTGCCA GTGCCATGCC CTTTCTACTT
GTGATGCTAT TGATGTGTTT AGGTTTATAT CATGCACTTA AAGACGACTG GCTTAAACTC
AGTAATGTGC AGTCACACAA TACCAGTGTC CAGTACGCGA CAACCAATAT GAGCTGGCAA
GACAGAATAG GGGTACTCGT CTCCCAACCT AGCCACAGCG AGGCCAAGGC ATTTATTGAA
ACCGTGGTAG AGCCGGCTTT GCTAGAGGTG AAAACTATCT TTGTCTCTAA AGGGTTAGCT
GCACAGATAA TCCACCTCGA TGGCCGTGTA AGGCTGATTA TTGGTCCCGA TGAACGGCTC
CCGTTTGTCT ATGGCCTCTG GACTCGCGCA TTTGTGACTG CAGCTTCAAC TGAAAGCGGC
GCTGAGCAAG CTAACGACAC TGAGATTGCA ACAGAACGAA CAGCAGCTGA AACGCCGAAT
GCCACTGAGA GTGCGTATTA CCGCGTCGAA GTTTTCTTGG AGCATGGTGG ACAGCAGTAC
GATGTGATGG GCTATACCCA AGAGCAAATT ATTGCCGATA TTGTCAGTCA ATATGAAAGA
TATTTGCACT ATCTGCATTT ATCTAATGCA GAGCTTGCAT AA
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| Protein sequence | MPFKSSINPA VFFSSVILIT LMVFLCALWP QEASHFFKSV QGGLEAKAGW LYILAVAIFL
LFILFVMMSR FGDIKLGPDH AVPDYSYKSW IAMLFSAGMG IGLMFFGVAE PVMHYLAPPD
ATPETIAAAK DAMRITFFHW GLHAWAIYAV VALSLAYFSY RHKLPLLPRS SLYPLIGERI
YGPIGHAVDT FAVLGTMFGI ATSLGFGVLQ VNSGLSYLID GFPNNAWMQV GLIAIITAIA
TLSVFSGLDK GVKRLSELNL GLACLLMLAV LLLGPTVVLL QAFVQNTGSY LSELVGKTFN
LYAYQHKEDW IGGWTLLYWG WWISWSPFVG TFIAKVSRGR TIREFLIGVL FVPSAITFLW
MTVFGNSAID AIMNHGASYL AEAVSTDVSV ALFKFFEHLP FSNLLSVIAL CLVVTFFVTS
SDSGSLVIDN LTSGGDDNAP VWQRIFWAVL EGAVAAVLLL AGGLQALQTA AIASAMPFLL
VMLLMCLGLY HALKDDWLKL SNVQSHNTSV QYATTNMSWQ DRIGVLVSQP SHSEAKAFIE
TVVEPALLEV KTIFVSKGLA AQIIHLDGRV RLIIGPDERL PFVYGLWTRA FVTAASTESG
AEQANDTEIA TERTAAETPN ATESAYYRVE VFLEHGGQQY DVMGYTQEQI IADIVSQYER
YLHYLHLSNA ELA
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