| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1346 |
|---|
| Symbol | |
|---|
| ID | 4017632 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 1565702 |
|---|
| End bp | 1567906 |
|---|
| Gene Length | 2205 bp |
|---|
| Protein Length | 734 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637955343 |
|---|
| Product | ATP-binding region, ATPase-like protein |
|---|
| Protein accession | YP_562355 |
|---|
| Protein GI | 91792704 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0643] Chemotaxis protein histidine kinase and related kinases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTTTG ATGTTGATGA AGAGATACTC CAGGACTTTT TGGTAGAAGC TGGTGAGATT
TTAGAGCTTC TATCGGAGCA GCTTGTTGCT CTTGAAAATA ATCCTGATGA CACTGATCTA
CTAAATGCTA TTTTTAGGGG CTTCCATACC GTTAAAGGCG GTGCGGGTTT CTTGAGCCTT
AATCCCATGG TTGCGGTTTG CCATGAGGCA GAAAATACCT TTGACCTTCT TCGCACAGGT
AAACGTAGTG TTAACGCAGA GCTGATGGAT ATCATCCTCC AAGCCGTAGA TGCGATTAAC
ATGATGTTTA GTCAGACTCA GCAAGGGGAA AACCAAGATC CTGTTGATGC TGAACTTCTT
GGAAAGCTAA AGCTGCTGAG TTCTGGTGCT CCATTGCCTT CAGAAATGAC GGGTGTTGAA
GACGTTGCTG AAGCAGTCTA TGAAGAACCA GAGCTTGAAT CTGAAGCCGA ATTGGTCGAA
GACGTTGAGA ATGTTAGTGT TGAATCGACT CAAAGTGACA CGATTGATGA AATAGATGAA
AGCGAGTTCG AAGCCCTCTT AGATGCCTTA CATGGCCCTA GTGGCAGCTC ATCGGCGCCC
ACATCAAGTA CTGCCCCAGT TGGCAATGCT GATGTCGCCA GTGATGAAAT CACTGATGAT
GAGTTTGAGC GACTCCTTGA TGAGTTGCAC GGTTCAGGTA ATCAAACTGA GGTTAAAGCC
ACTGCTCCAA CTCCTAAAGC GCCAGAGGTC ACTGCTAGCA CGGCAAATTC AGATGATATT
ACCGATGATG AATTTGAGCG TCTTCTCGAT GAATTGCATG GTAAAGGCAG TGGCGGGGCA
TCTGTTGAAA AACCGGCGGC TCCAGTTGCT AAAGCTGCGC CCCCAACGCC TCCTAAGCCT
GCGGCTCCTG TTGCTGCAGC AAAAGTTGAA GCCGTAAAAC CTGCGCCAAC ACCTGTAGTT
AAAGCCCCAG AGCCTAAGGT CATTGACGAA GCTAAAATGC CGGCAAAAGC CTCGGCGGTG
CCTCAAGGTG AAACTACAGT ACGTGTTGAT ACTGCAAGGC TTGATCAGAT CATGAACATG
GTCGGTGAGC TAGTATTAGT GCGCAATCGC TTAGTGAGCT TAGGCATTAC CCGCGAAGAT
GAAGCCATGA CGAAAGCCTT GGCGAATTTA GATTTGGTGA CGGCTGACTT ACAAGGTGCG
GTGATGAAAA CCCGCATGCA GCCTATTAAG AAGGTGTTTG GCCGTTTCCC CCGAGTGGTT
CGAGATTTAG CTCGAACACT CAATAAAGAA ATTGATCTCA TCATGGTGGG CGAAGAGACT
GACCTTGATA AAAACCTGGT TGAGGCGTTA GCGGATCCCT TGGTCCACTT AGTGAGAAAC
TCTGTCGATC ACGGTATTGA AATGCCTCTT ACTCGTGAAG CAACGGGTAA ATCACGTACT
GGTACTATCA CCTTGTCAGC AAGTCAGGAA GGCGATCACA TCTTATTGAA AATTGAAGAT
GATGGCGCCG GTATGGATCC TGTAAAACTC AAGGAAATAG CCATTTCTCG AGGCGTGCTT
GATGAAGACT CTGCAGCAAG AATGTCTGAT AGTGAAGCCT ATAACTTGAT TTTTGCCCCA
GGATTCTCCA CCAAAGTTGA AATATCGGAT ATCTCGGGAC GTGGTGTTGG AATGGACGTG
GTGAAAACCC GGATTAACCA ACTCAATGGT ACTGTGCATA TTGACTCAAT GAAGGGCAAG
GGCACCATAC TCGAAATCAA AGTTCCCTTA ACGCTAGCCA TAATGCCAAC CTTAATGGTA
GACGTCGCTA AGCAAGTGTT TGCCTTGCCG TTATCCAGTG TTAATGAAAT TTTCCATTTA
GACTTAACTA AAACCAATAT TGTCGATGGC CAACTGACGG TTATCGTGCG CAATAAAGCT
GTTCCCTTGT TTTATTTAGA GCAGTGGTTG CATCGTCATA AAACCAAGTT AAAGCATGGT
GATAAGAAGC AAGGCCATGT CGTCATCGTT CAACTAGGTA CCCGTCAAAT TGGCTTTGTG
GTGGATGCAT TGATTGGTCA GGAAGAAGTT GTCATCAAGC CGTTAGGTTC TATGCTGCAG
GGCACGCCGG GGATGGCGGG AGCGACGATT ACATCTGATG GCGGTATCGC GTTAATATTA
GATGTTCCTG GGCTGTTAAA GCACTATGTA AGCTCGAAGC AGTAA
|
|---|
| Protein sequence | MSFDVDEEIL QDFLVEAGEI LELLSEQLVA LENNPDDTDL LNAIFRGFHT VKGGAGFLSL
NPMVAVCHEA ENTFDLLRTG KRSVNAELMD IILQAVDAIN MMFSQTQQGE NQDPVDAELL
GKLKLLSSGA PLPSEMTGVE DVAEAVYEEP ELESEAELVE DVENVSVEST QSDTIDEIDE
SEFEALLDAL HGPSGSSSAP TSSTAPVGNA DVASDEITDD EFERLLDELH GSGNQTEVKA
TAPTPKAPEV TASTANSDDI TDDEFERLLD ELHGKGSGGA SVEKPAAPVA KAAPPTPPKP
AAPVAAAKVE AVKPAPTPVV KAPEPKVIDE AKMPAKASAV PQGETTVRVD TARLDQIMNM
VGELVLVRNR LVSLGITRED EAMTKALANL DLVTADLQGA VMKTRMQPIK KVFGRFPRVV
RDLARTLNKE IDLIMVGEET DLDKNLVEAL ADPLVHLVRN SVDHGIEMPL TREATGKSRT
GTITLSASQE GDHILLKIED DGAGMDPVKL KEIAISRGVL DEDSAARMSD SEAYNLIFAP
GFSTKVEISD ISGRGVGMDV VKTRINQLNG TVHIDSMKGK GTILEIKVPL TLAIMPTLMV
DVAKQVFALP LSSVNEIFHL DLTKTNIVDG QLTVIVRNKA VPLFYLEQWL HRHKTKLKHG
DKKQGHVVIV QLGTRQIGFV VDALIGQEEV VIKPLGSMLQ GTPGMAGATI TSDGGIALIL
DVPGLLKHYV SSKQ
|
|---|
| |