| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1343 |
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| Symbol | fliA |
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| ID | 4017629 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1563788 |
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| End bp | 1564507 |
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| Gene Length | 720 bp |
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| Protein Length | 239 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637955340 |
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| Product | flagellar biosynthesis sigma factor |
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| Protein accession | YP_562352 |
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| Protein GI | 91792701 |
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| COG category | [K] Transcription |
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| COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
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| TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.600056 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGAATAAAG CCGCAGCGTA TACTCAGTTC GATGATAAGT CGTCCGTTAT TGAACAGTAT
GCTCCGTTGG TGAAAAAAAT TGCTCATCAT ATGCTTGCAC GGCTTCCAGC ATCTGTACAA
CTTGATGACT TATTACAAGC TGGAATGATG GGACTGCTGG AAGCGGCGTC AAAATTTGAT
GGTACCAAGG GCGCTAAGTT TGAAACCTTC GCTGGTATTC GAATTCGTGG TGCCATGATT
GATGAAATTC GCCGAGGAGA CTGGGTTCCA CGCTCAGTGC ATCGCAATCA AAGGCGCGTG
GCTCAGGTGA TTGATGAGCT AGAACAACAC TTTGGAAGAG ATGCTCGTGA CACAGAAATT
GCAGAAAAAC TTGATATGTC GCTCGATGAG TACCATCATA TCTTAAATGA TGTTTCTGTT
GGAAAAATCA TAGGCATAGA AGATCTGGGT GTATCACAGG ATGTGATTAT TACCGAAGAA
ACGTCAATGG ATGAATCCTT TGATGAATTA GTTGAAACTC AATTCCAATC AGCGCTGGTT
GAAGCAATTA AAACATTGCC AGAAAGAGAT GCTTTAGTGT TATCGCTTTA CTATGATGAA
GCACTGAATT TAAAAGAAAT TGGCGCCATA CTTGAGGTGA GCGAATCTAG GGTTAGTCAG
ATATTAAGTC AGGCTATGCT TAGATTAAAA GCAAAACTCA AGCATTGGAC ACAAACATAA
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| Protein sequence | MNKAAAYTQF DDKSSVIEQY APLVKKIAHH MLARLPASVQ LDDLLQAGMM GLLEAASKFD
GTKGAKFETF AGIRIRGAMI DEIRRGDWVP RSVHRNQRRV AQVIDELEQH FGRDARDTEI
AEKLDMSLDE YHHILNDVSV GKIIGIEDLG VSQDVIITEE TSMDESFDEL VETQFQSALV
EAIKTLPERD ALVLSLYYDE ALNLKEIGAI LEVSESRVSQ ILSQAMLRLK AKLKHWTQT
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