| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1340 |
|---|
| Symbol | flhA |
|---|
| ID | 4017626 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 1559392 |
|---|
| End bp | 1561491 |
|---|
| Gene Length | 2100 bp |
|---|
| Protein Length | 699 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637955337 |
|---|
| Product | flagellar biosynthesis protein FlhA |
|---|
| Protein accession | YP_562349 |
|---|
| Protein GI | 91792698 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1298] Flagellar biosynthesis pathway, component FlhA |
|---|
| TIGRFAM ID | [TIGR01398] flagellar biosynthesis protein FlhA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGTAA AAGCCGCGTT AGGGCAAATA AAGTCGATCC GCCCCAGCAC CTTTAAAGGG
ATAGGTACAC CTTTACTGGT ATTAGCTGCG TTAGGCATGG TCGTTCTACC TATACCGCCT
TTCCTGCTCG ACATCTTATT TTCTTTTAAC ATCTCCTTAG CCCTAGTGAT ATTACTGGTC
GCTATTTATA GCAACAGACC GCTTGATTTT GCTGCATTTC CGACCGTGCT ACTCATTGCA
ACCTTGCTAA GGCTGGCACT CAATGTGGCC TCAACCCGAG TGGTGTTGCT AGAAGGTCAC
AATGGCGGTG ATGCGGCGGG TAAAGTGATC GAAGCGTTTG GCTCTGTGGT TATTGGCGGA
AATTATGCCG TGGGCTTAAT CGTGTTTTTA ATCCTTATCA TCATTAACTT TGCCGTTGTT
ACAAAAGGCG CGGGTCGCAT CTCAGAGGTG AGTGCTCGCT TTACCTTGGA TGCTATGCCT
GGCAAGCAAA TGGCTATTGA TGCCGACTTA AATGCGGGGG TGTTAACTCA AGAACAAGCT
AGAATACGCC GAGCTGAGGT GACTAAAGAA GCCGATTTTT ATGGCGCGAT GGACGGTGCA
TCGAAATTCG TAAAAGGGGA TGCGATCGCG GGGATCATGA TCCTAGTCAT CAATATTCTG
GGTGGTTTTA TTATCGGTAT GGTGCAGCAC GGTCTTGATT TCTCTACTGC TGCTGAAATT
TATACTCTAC TGACAATCGG TGATGGCCTA GTGGCGCAAA TCCCCGGACT ATTACTTTCT
ATTGCAGCCG CCTTGATGGT TACCCGCCAG AATGAGTCTG GTGATATGGG GCAGATGTTA
ATCAGCCAAA TGTTTGATAG CCCTAAGGCG TTAGTCATTG CCTCCGGTTT ACTTTTCACT
ATGGGCGTTG TTCCTGGTAT GCCCCATATT GCTTTCTTAA GTTTTGCCGC CATTACCGCT
GGCACAGCCT TTATTATCCA AAAGCGCATT AAAGAAAAGA AAGAAACTGC ATTAGCACTG
GCAGTGAATG GTCCTAGTGA AGCTAAAGAT AAAGAGCCTA AAGATCTCAG CTGGGATGAT
GTACGTCATG TAGACACTAT AGGCTTAGAA GTCGGCTATC GCTTGATCCC CTTAGTGGAT
AAAGGTCAAG GTGGCGAGCT GCTTGGACGG ATCAAGGGCG TGCGTAAGAA GCTGTCTCAA
GAGTTGGGTT TTTTGGTTCC AGCTGTACAT ATTCGTGATA ATTTAGATTT ATCGCCTAAT
GCTTACCGGA TTTCTTTGAT GGGTGTTGTG GTCGGTGAAG CCGAGGTAAG GCATGATTGT
GAGCTTGCTA TTAACCCAGG TCAAGTCTAT GGCAAGCTAG ATGGTATCGA CACCAAAGAT
CCCGCATTCG GCTTAGAAGC CGTTTGGATA ACCGCAGAGC AAAGAGAGCA TGCACAAACC
TTAGGCTACA CAGTCGTCGA TACAGCAACC GTAGTGGCGA CTCACATCAG CCAAGTATTA
ACCAACAATG CGGCTAAATT ACTTGGATAC GAAGAAGTTC AGCAGCTGAT GGATATGTTA
GCTCGTCAGT CTCCTAAGTT AGTCGATGGT TTTATTCCTG ATATTATGCC CTTAGGCAGC
GTAGTTAAAG TGATGCAAAA TCTTCTTAAT GAAGGGGTTT CTGTCAGAGA TCTGCGCACC
ATAGTGCAAA CCCTGTTAGA ATACGGAAGT AAGAGTGCGG ACACCGAAGT ATTAACCGCT
GCTGTGCGCA TCGCACTCAA GCGCATGATC ATGCAAGAGC TTTCAGGCCC TGAATTAGAA
ATCCCTGTCA TAACATTGGC GCCGGAGTTG GAACAGATGT TGCATAAGTC AATGCAAGCG
ACGGGGGGGG ATGGTCCAAA TATTGAACCT GGTCTTGCTG AGCGGATGCA ACAATCGTTA
TTAAGTGCAG CGCAAAAGCA AGAGATGGTC GGACAGCCAG CCATTTTATT GACATCAGGT
ATGTTAAGGT CAACGTTATC ACGCTTTGTA AAGTACACAA TTCCGAATTT ACGGGTGATT
TCATACCAAG AAATCCCCGA TGAAAAACAA ATTCGAATCG TATCGGCAGT GGGGCAATAG
|
|---|
| Protein sequence | MEVKAALGQI KSIRPSTFKG IGTPLLVLAA LGMVVLPIPP FLLDILFSFN ISLALVILLV
AIYSNRPLDF AAFPTVLLIA TLLRLALNVA STRVVLLEGH NGGDAAGKVI EAFGSVVIGG
NYAVGLIVFL ILIIINFAVV TKGAGRISEV SARFTLDAMP GKQMAIDADL NAGVLTQEQA
RIRRAEVTKE ADFYGAMDGA SKFVKGDAIA GIMILVINIL GGFIIGMVQH GLDFSTAAEI
YTLLTIGDGL VAQIPGLLLS IAAALMVTRQ NESGDMGQML ISQMFDSPKA LVIASGLLFT
MGVVPGMPHI AFLSFAAITA GTAFIIQKRI KEKKETALAL AVNGPSEAKD KEPKDLSWDD
VRHVDTIGLE VGYRLIPLVD KGQGGELLGR IKGVRKKLSQ ELGFLVPAVH IRDNLDLSPN
AYRISLMGVV VGEAEVRHDC ELAINPGQVY GKLDGIDTKD PAFGLEAVWI TAEQREHAQT
LGYTVVDTAT VVATHISQVL TNNAAKLLGY EEVQQLMDML ARQSPKLVDG FIPDIMPLGS
VVKVMQNLLN EGVSVRDLRT IVQTLLEYGS KSADTEVLTA AVRIALKRMI MQELSGPELE
IPVITLAPEL EQMLHKSMQA TGGDGPNIEP GLAERMQQSL LSAAQKQEMV GQPAILLTSG
MLRSTLSRFV KYTIPNLRVI SYQEIPDEKQ IRIVSAVGQ
|
|---|
| |